Locus 3308

Sequence ID 2R_DroMel_CAF1
Location 11,275,814 – 11,275,919
Length 105
Max. P 0.801577
window5413

overview

Window 3

Location 11,275,814 – 11,275,919
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -36.34
Consensus MFE -25.83
Energy contribution -25.88
Covariance contribution 0.06
Combinations/Pair 1.21
Mean z-score -1.46
Structure conservation index 0.71
SVM decision value 0.62
SVM RNA-class probability 0.801577
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11275814 105 - 20766785
CUCUAUCUCCACGAUGGCCGAGGUAAGCAACGUGUUCGACUGCAGCGCCGUGUAGUCCGGCAAUUGCUCCACCACCGACGGCUCCGGCAGCUGCAGAUCCUCAUU
..(((((.....)))))..((((.......((....)).(((((((((((.(.(((((((..............)))..))))))))).)))))))..))))... ( -34.54)
>DroVir_CAF1 44015 96 - 1
CUCGAUUUCGACAAUGGCCGAGGUGAGCAAUGUGUUGGACUGCAGCGCACUGUAGUCGGGCAAUUGCUCCG---GCGAUAACUCUGGCA------GAUCCUCAUU
.(((....)))..((.((((....(((((((.((((.((((((((....)))))))).)))))))))))))---)).))..........------.......... ( -34.60)
>DroPse_CAF1 68191 105 - 1
CUCUAUUUCCACAAUGGCCGACGUGAGUAACGUGUUCGACUGCAGUGUCGUGUAGUUCGUCAGUUGCUCGGCCAGCGACGGCUCCGGCAGAUGGAGGUCUUCGUU
((((((((((....(((((.....(((((((.((..((((((((......))))).))).))))))))))))))((....))...)).))))))))......... ( -36.70)
>DroGri_CAF1 38977 96 - 1
CUCGAUUUCCACAAUGGCCGAUGUGAGCAAUGUGUUGGACUGCAGCGCACUGUAGUCGGGCAAUUGCUCCG---GCGAUGGCUCCGGCA------GAUCCUCAUU
...(((((((.....(((((.((((((((((.((((.((((((((....)))))))).)))))))))))..---))).)))))..)).)------))))...... ( -38.20)
>DroMoj_CAF1 44700 96 - 1
UUCGAUCUCCACAAUGGCCGAGGUGAGCAAAGUAUUCGACUGCAGCGCGCUGUAGUCUGGCAAUUGCUCGC---CGGACAGCUCCGGCA------AAUCCUCAUU
...................((((.((((((.((....((((((((....))))))))..))..))))))((---((((....)))))).------...))))... ( -37.80)
>DroPer_CAF1 67029 105 - 1
CUCUAUUUCCACAAUAGCCGACGUGAGUAACGUGUUCGACUGCAGUGUCGUGUAGUUCGUCAGUUGCUCGGCCAGCGACGGCUCCGGCAGAUGGAGGUCUUCGUU
((((((((((.....(((((.((((((((((.((..((((((((......))))).))).))))))))).....))).)))))..)).))))))))......... ( -36.20)
>consensus
CUCGAUUUCCACAAUGGCCGAGGUGAGCAACGUGUUCGACUGCAGCGCCCUGUAGUCCGGCAAUUGCUCCG___GCGACGGCUCCGGCA______GAUCCUCAUU
................((((..(((((((((.((((.(((((((......))))))).)))))))))))...........))..))))................. (-25.83 = -25.88 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:20 2006