Locus 3307

Sequence ID 2R_DroMel_CAF1
Location 11,275,091 – 11,275,183
Length 92
Max. P 0.655601
window5412

overview

Window 2

Location 11,275,091 – 11,275,183
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 83.92
Mean single sequence MFE -20.73
Consensus MFE -14.12
Energy contribution -14.12
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.52
Structure conservation index 0.68
SVM decision value 0.26
SVM RNA-class probability 0.655601
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11275091 92 + 20766785
UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUCGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU
...................((((((.........((((---(....)))))(((((..(((.....)))...)))))............)))))) ( -16.90)
>DroPse_CAF1 67634 81 + 1
-------G-CCCACUUGUACUCGGG-----UA-UGCCACGUGGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAGUGACAAAGAU
-------(-(((..........)))-----).-.(((.(((((((..((....))..)))))).).))).(((((((((.....))))))))).. ( -28.00)
>DroSim_CAF1 64751 92 + 1
UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUCGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU
...................((((((.........((((---(....)))))(((((..(((.....)))...)))))............)))))) ( -16.90)
>DroEre_CAF1 63715 92 + 1
UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUUGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU
................................((((((---(....))))))).....(((.....))).((((((((.......)))))))).. ( -16.80)
>DroYak_CAF1 63950 92 + 1
UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUGGCCA---UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU
.................................((((.---.((...(((((.....)))))..))))))((((((((.......)))))))).. ( -19.00)
>DroPer_CAF1 66472 81 + 1
-------G-CCCACUUGUACUCGGG-----UA-UGCCACGUGGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU
-------(-(((..........)))-----).-.(((.(((((((..((....))..)))))).).))).((((((((.......)))))))).. ( -26.80)
>consensus
UCAAAAUCCUCCCCUUGAAAUCUUUUUACCUAUUGCCA___UGCACAUGGCAACAAUUGCCACAGCGGCCUUUUGUUAUUUAAAUUGACAAAGAU
..................................(((.....((...(((((.....)))))..))))).((((((((.......)))))))).. (-14.12 = -14.12 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:19 2006