| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,274,596 – 11,274,689 |
| Length | 93 |
| Max. P | 0.592636 |
| Location | 11,274,596 – 11,274,689 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.66 |
| Mean single sequence MFE | -25.16 |
| Consensus MFE | -11.71 |
| Energy contribution | -12.43 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11274596 93 - 20766785 GGCUCUUUGUUGGUUUAAUUGACUUGGCC--AGCA---GCAAGGACAGUUUUCCGUCCUUGCAACGCAGGACAUCAUCCCCUUUAUCUCUUUCGCCCU------ (((....((((((((..........))))--))))---((((((((........))))))))......(((.....)))..............)))..------ ( -27.80) >DroSec_CAF1 61786 93 - 1 GGCUCUUUGUUGGUUUAAUUGACUUGGCC--ACCA---GCAAGGACAGUUUUCCGUCCUUGGAACGCAGGACAUCUUCCCCUUUACCUCUUUCGCCCU------ ((((((((((((((((((.....))))..--))))---)))))))..((.(((((....))))).)).(((.....)))..............)))..------ ( -23.70) >DroSim_CAF1 64251 93 - 1 GGCUCUUUGUUGGUUUAAUUGACUUGGCC--AGCA---GCAAGGACAGUUUUCCGUCCUUGGAACGCAGGACAUCUUUCCCUCUACCUCUUUCGCCCU------ (((...(((((((((..........))))--))))---)(((((((........)))))))(((.(.(((...............)))).))))))..------ ( -25.16) >DroEre_CAF1 63217 84 - 1 GGCUCUUUGUUGGUUUAAUUGACUUGGCC--AGCA---GCAAGGACAGUUUUCCGUCCUUGGA--GCAGGACAUCUUCCCCUUUUCCCCCC------------- .((((.(((((((((..........))))--))))---)(((((((........)))))))))--)).(((.....)))............------------- ( -26.60) >DroYak_CAF1 63437 99 - 1 GUCUCUUUGUUGGUUUAAUUGACUUGGCC--AGCA---GCAAGGACAGUUUUCCGUCCUUGGAACGCAGGACAUCUUCCCCUUUAUCCCCUUACCCCUUUUGCU ((((..(((((((((..........))))--))))---)(((((((........))))))).......))))................................ ( -22.80) >DroAna_CAF1 56690 88 - 1 AUCUCUUUGUUUGUUUAAUUGACUUGGCCGGAGCAGCCACGAGGACGUGUCCUUGUCCC--------UGGACACAUUUUCAUUCAUGCUCU--CCCCU------ .........................((..((((((.....(((((.((((((.......--------.)))))).))))).....))))))--..)).------ ( -24.90) >consensus GGCUCUUUGUUGGUUUAAUUGACUUGGCC__AGCA___GCAAGGACAGUUUUCCGUCCUUGGAACGCAGGACAUCUUCCCCUUUACCCCCUUCGCCCU______ ...........((......((.((((((....)).....(((((((........))))))).....)))).))......))....................... (-11.71 = -12.43 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:18 2006