| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,260,465 – 11,260,572 |
| Length | 107 |
| Max. P | 0.925347 |
| Location | 11,260,465 – 11,260,572 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 96.12 |
| Mean single sequence MFE | -26.14 |
| Consensus MFE | -24.44 |
| Energy contribution | -24.20 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11260465 107 - 20766785 -CAACAACACCCCAUCAUCCAGUUGAGCCGGGCAAAAGCCAUAAAAAUGCGCAUAAAGCGCAAAACUGAUUGAGAGUUAUAUGAAGACACACGGCACACAGUGCGGCA -...((((.............)))).((((.((....(((.......(((((.....))))).((((.......))))..............))).....)).)))). ( -25.52) >DroSec_CAF1 47137 107 - 1 -CAACAACACCCCAUCAUCCAGUUGAGCCGGGCAAAAGCCAUAAAAAUGCGCAUAAAGCGCAAAACUGAUUGAGAGUUAUAUGAAGACACACGGUAUACAGUGCGGCA -...((((.............)))).(((((((....))).......(((((.....)))))..((((((((.(.(((.......))).).))))...)))).)))). ( -24.92) >DroSim_CAF1 50174 107 - 1 -CAACAACACCCCAUCAUCCAGUUGAGCCGGGCAAAAGCCAUAAAAAUGCGCAUAAAGCGCAAAACUGAUUGAGAGUUAUAUGAAGACACACGGUACACAGUGCGGCA -...((((.............)))).(((((((....))).......(((((.....)))))..((((((((.(.(((.......))).).))))...)))).)))). ( -24.92) >DroEre_CAF1 48985 105 - 1 ACAACAACACCCC---AUCCAGUUGAGCCGGGCAAAAGCCAUAAAAAUGCGCAUAAAGCGCAAAACUGAUUGAGAGUUAUAUGAAGACACACGGCUCACAGUACGGCA ....((((.....---.....)))).(((((((....))).......(((((.....)))))......((((.((((..(.((....)).)..)))).)))).)))). ( -29.20) >consensus _CAACAACACCCCAUCAUCCAGUUGAGCCGGGCAAAAGCCAUAAAAAUGCGCAUAAAGCGCAAAACUGAUUGAGAGUUAUAUGAAGACACACGGCACACAGUGCGGCA ....((((.............)))).((((.((....(((.......(((((.....))))).((((.......))))..............))).....)).)))). (-24.44 = -24.20 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:16 2006