Locus 3302

Sequence ID 2R_DroMel_CAF1
Location 11,252,096 – 11,252,191
Length 95
Max. P 0.680835
window5407

overview

Window 7

Location 11,252,096 – 11,252,191
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 85.68
Mean single sequence MFE -20.12
Consensus MFE -13.68
Energy contribution -14.84
Covariance contribution 1.16
Combinations/Pair 1.09
Mean z-score -1.98
Structure conservation index 0.68
SVM decision value 0.31
SVM RNA-class probability 0.680835
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11252096 95 - 20766785
GAUUUUCGGUAUAACAACUCUGUAAGCAGAUUCAUGUUAAGCAAUAACAGAGGUCCUUAAAACGGAUUUUUUCUGUUAUCUUCACAACUUCCCCA
.......((.........((((....))))....(((.(((..(((((((((((((.......))))...)))))))))))).)))......)). ( -19.00)
>DroSec_CAF1 38746 95 - 1
GAUUUUCGGUAUAACAACUCUGUUAGCAAAUUCAUGUUAAGCAAUAACAGAGGUCCUUAAAUCGGAUUUAUUCUGUUAACCUUAAAACGUGCCCA
.......(((((........((((((((......)))).)))).((((((((((((.......))))...))))))))..........))))).. ( -19.00)
>DroSim_CAF1 41424 95 - 1
GAUUUUCGGUAUAACAACUCUGUAAGCAGAUUCAUGUUAAGCUAUAACAGAGGUCCUUAAAUUGGAUUUAUUCUGUUAACCUUAAAAAGUGCCCA
.......(((((......((((....))))......(((((...((((((((((((.......))))...))))))))..)))))...))))).. ( -21.90)
>DroEre_CAF1 40578 95 - 1
AAUUUUCGGUAUAACAAAUCUGUAAACAGAUUCAUGUUAAGGAUUAACAGAGGUCCUUAAAUCGGCCCUUUUCUGUUAUCUAGAAAACUUCCCCA
..(((((....(((((((((((....))))))..))))).((((.((((((((((........))))....)))))))))).)))))........ ( -22.70)
>DroYak_CAF1 40159 91 - 1
GAUUUUCGGUAUAACAACUCUGUAAACAGAUUCAUGUUAAGGAUUAACAGAGGUCCUGAAAUCGC----AUCCUGUUAUCUUUAAAACUGCCCCA
.......((((.......((((....))))......((((((((.(((((.(((.(.......).----))))))))))))))))...))))... ( -18.00)
>consensus
GAUUUUCGGUAUAACAACUCUGUAAGCAGAUUCAUGUUAAGCAAUAACAGAGGUCCUUAAAUCGGAUUUAUUCUGUUAUCUUUAAAACUUCCCCA
.......((..(((((..((((....))))....))))).....((((((((((((.......)))))...)))))))..............)). (-13.68 = -14.84 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:14 2006