Locus 3297

Sequence ID	2R_DroMel_CAF1
Location	11,246,230 – 11,246,333
Length	103
Max. P	0.847230

overview

Window 9

Location	11,246,230 – 11,246,333
Length	103
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	89.26
Mean single sequence MFE	-23.89
Consensus MFE	-17.22
Energy contribution	-17.71
Covariance contribution	0.50
Combinations/Pair	1.00
Mean z-score	-2.45
Structure conservation index	0.72
SVM decision value	0.77
SVM RNA-class probability	0.847230
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11246230 103 - 20766785
------UUUUUUCUCUGGCAAAGGGAUGGGCUGGGGUGA-----AAAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU
------.............(((.(((((.((((((((..-----.......)))......(((......)))............))))).....((.....))..))))).))) ( -19.90)
>DroSec_CAF1 33061 105 - 1
------UUUU---GCUGGCAAAGGGAUGGGCUGGGGUGAUGAAAAUAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU
------.(((---((((((.......((...((((((.((....))......((.......))...))))))...))......)))))))))...................... ( -24.42)
>DroSim_CAF1 35727 105 - 1
------UUUU---GCUGGCAAAGGGAUGGGCUGGGGUGAUGAAAAUAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU
------.(((---((((((.......((...((((((.((....))......((.......))...))))))...))......)))))))))...................... ( -24.42)
>DroYak_CAF1 34303 102 - 1
UUUUUAUUUU---GCUGGCAAAGGGAUGGGCUGGGC---------CAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU
((((((((((---((((((..(((..(.(((...))---------)...)..))).....(((......)))...........))))))))).))))))).............. ( -26.80)
>consensus
______UUUU___GCUGGCAAAGGGAUGGGCUGGGGUGA_____AUAAAAAACCUAAAAAUGGAAAACCCCAAAACGAAAUAAGCCAGCAGACAUGAAAAACAAGCAUCCGUUU
...................(((.(((((.((((((((..............)))......(((......)))............))))).....((.....))..))))).))) (-17.22 = -17.71 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:06 2006