Locus 3288

Sequence ID 2R_DroMel_CAF1
Location 11,224,433 – 11,224,539
Length 106
Max. P 0.652531
window5384

overview

Window 4

Location 11,224,433 – 11,224,539
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.22
Mean single sequence MFE -23.68
Consensus MFE -18.91
Energy contribution -18.93
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -2.41
Structure conservation index 0.80
SVM decision value 0.25
SVM RNA-class probability 0.652531
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11224433 106 - 20766785
G---------AAAAAUCUGAAUG-GGCGA---GGACAAACUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA
.---------.............-.((((---.(((((((((-(((((((....)))..((((((....))))))..))))))))))))).).....(((.((....))))).))).... ( -24.30)
>DroPse_CAF1 13286 105 - 1
G---------AAAAAUCUGAAUG-GU--A---GGACAAACUUUUUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACACAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA
.---------.......(((...-.(--(---.(((((((((((((((((....)))..((((((....))))))))).))))))))))).))....))).((....))........... ( -22.20)
>DroWil_CAF1 28408 116 - 1
GUCGAAAAACAAAAGGCGAAACGUGGAAA---GGGCAAACUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA
...............(((....((((..(---.(((((((((-(((((((....)))..((((((....))))))..))))))))))))).).....))))((....))....))).... ( -25.90)
>DroYak_CAF1 11797 106 - 1
G---------AAAAAUCUGAAUG-GGCGA---GGACAAAGUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA
.---------.............-.((((---.((((((.((-(((((((....)))..((((((....))))))..)))))).)))))).).....(((.((....))))).))).... ( -20.40)
>DroAna_CAF1 11851 109 - 1
G---------AAAAAUCUGAAUG-GGCGAGCAGGACAAACUU-UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA
.---------.............-.(((..((.(((((((((-(((((((....)))..((((((....))))))..))))))))))))).))....(((.((....))))).))).... ( -27.10)
>DroPer_CAF1 12844 105 - 1
G---------AAAAAUCUGAAUG-GU--A---GGACAAACUUUUUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACACAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA
.---------.......(((...-.(--(---.(((((((((((((((((....)))..((((((....))))))))).))))))))))).))....))).((....))........... ( -22.20)
>consensus
G_________AAAAAUCUGAAUG_GGCGA___GGACAAACUU_UUGUUGCUUAAGUAAACUUGAAAAGUUUCAAGACAUAAAAGUUUGUUGUGAAAGUCACACGAAAGUUGAAUGCAAUA
.................................(((((((((..((((((....)))..((((((....)))))))))...))))))))).((....(((.((....)))))...))... (-18.91 = -18.93 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:52 2006