| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,217,616 – 11,217,722 |
| Length | 106 |
| Max. P | 0.594220 |
| Location | 11,217,616 – 11,217,722 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.23 |
| Mean single sequence MFE | -32.97 |
| Consensus MFE | -22.07 |
| Energy contribution | -22.65 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11217616 106 - 20766785 GGUUUCAGUGGGUGGCUGGGCGUCUGGCGGCGGUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGUGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA .(((.((((.....)))))))((.(((((((((....)))))))))))...((((((((...(((((....)......(((((....))))).)))).)))))))) ( -40.20) >DroSec_CAF1 4609 106 - 1 GGUUUCAGUGGGUGGCUGGUGGUCUAACGACGGUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGG ((((.((.((((..((.(((((((....)))....))))))..))......((((((((....))))))))...............)).)).))))..(....).. ( -36.50) >DroSim_CAF1 5799 106 - 1 GGUUUCAGUGGGUGGUUGGGCGUCGGAUGGCUAUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA (((..(((((.(((((((..(....).))))))).)))))..)))......((((((((...(((.(....)......(((((....)))))..))).)))))))) ( -35.30) >DroEre_CAF1 3300 94 - 1 GGUUUCAGUGGGUGGUUGGGCGGUUGG------------GUUGCCAGCAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA .(((.(..(((...((..(((((((((------------....)))))...((((((((....))))))))........))))..)).......)))..).))).. ( -31.70) >DroYak_CAF1 4697 84 - 1 GGUUUCAGUGGGUGGCUG----------------------CUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA .(((.(..(((.((((..----------------------..)))).....((((((((....)))))))).......(((((....)))))..)))..).))).. ( -27.50) >DroAna_CAF1 4800 102 - 1 ----UUUGUGGGUGGUAGGGUGGCUAAGGAAGGUGAAGAGCUGCCAACAAAUCGUCGCCAUCUGGCGGCAACAAUAAAAAGUUUUACAAUGUAACCGAGGCAAGGA ----(((((...((((..((..(((.............)))..))........((((((....))))))........................))))..))))).. ( -26.62) >consensus GGUUUCAGUGGGUGGCUGGGCGUCUGA_G_CGGUGCGCUGCUGCCAACAAAUCGUCGCCAGAUGGCGGCGACAAUAAAACGUUUUACAAUGUAACCAAGGCGACGA ((((.((.((((..((.......................))..))......((((((((....))))))))...............)).)).)))).......... (-22.07 = -22.65 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:51 2006