Locus 3286

Sequence ID 2R_DroMel_CAF1
Location 11,215,639 – 11,215,751
Length 112
Max. P 0.855935
window5382

overview

Window 2

Location 11,215,639 – 11,215,751
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.09
Mean single sequence MFE -37.75
Consensus MFE -22.12
Energy contribution -23.68
Covariance contribution 1.56
Combinations/Pair 1.37
Mean z-score -1.86
Structure conservation index 0.59
SVM decision value 0.81
SVM RNA-class probability 0.855935
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11215639 112 + 20766785
UGAGAGUUCGUGCGGAGAAUUCGGGGAUCAGAAGAUAACUGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACUUUGGAUGGCCUUGCUGCAAUUGAAUCUUUCAAAACCGA------AU--
(((((((((.(((((....(((((..(((....)))..))))).((((((((((((.....)))))))).))))...........)))))...))).)))))).......------..-- ( -34.20)
>DroSec_CAF1 1729 112 + 1
UGAGAGUUCAUGUGGAGAAUUCGGGGAUCAGAAGGUCACAGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACCUUGGGUGGCCUUGCUCCAAUUCAAUCUUUCAGAGCCCA------AU--
...(.((((.((.((((((((.((((.....((((((((..((((...((((((((.....)))))))).))))..)))))))).)))))))))..)))..)))))).).------..-- ( -43.00)
>DroSim_CAF1 1774 112 + 1
UGAGAGUUCAUGUGGAGAAUUCGGGGAUCAGAAGGUCACUGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACCUUGGAUGGCCUUGCUCCAAUUCAAUCUUACAGAGCCCA------AU--
...(.((((.(((((((((((.((((.....(((((((.(.((((...((((((((.....)))))))).)))).).))))))).)))))))))..)).)))))))).).------..-- ( -41.30)
>DroEre_CAF1 438 112 + 1
UGAGAGUUUGUGCGGAGAAUUCGGGGAUCAGAAGGUCACUGGAGGGAGCGAGAUACAAAUGGGAUCUCGACCCUGGAUGGCUUUGCUUCAGUUCAAUUUGUCAGAUCCCU------AU--
...((((((.......))))))(((((((..((((((((..(.((...((((((.(....)..)))))).)))..).)))))))....(((......)))...)))))))------..-- ( -35.50)
>DroYak_CAF1 1792 112 + 1
UGAGAGUUCGUGUGGCGAAUUCGGGGAUCAGAAGGUCACCGGAGGAAAUGAGAUCCAAAUGGGAUCCCGACCUUGGAUGGCUCUGCUCCAAUUCAAUAUAUCUGACUCUA------AU--
..((((((.(((((..(((((.((((..((((..((((.(.((((...((.(((((.....))))).)).)))).).)))))))))))))))))..)))))..)))))).------..-- ( -37.10)
>DroPer_CAF1 3170 120 + 1
UGAGGAGGCAUGCGGCAAGUUCUUGAGACUCAAGGUGCUUGGCGGCAGCGAAAUCAAGAUGGGAUCGAGACCUUGGAUGGCUCUGCUAAAGUAUGAUGCUACAGAACCCGGCACCCAGGG
((.((...((((((.((((((((((.....))))).))))).)(((((.(..(((.....((........))...)))..).)))))...)))))...)).))...(((........))) ( -35.40)
>consensus
UGAGAGUUCAUGCGGAGAAUUCGGGGAUCAGAAGGUCACUGGAGGGAGCGAGAUUCAAAUGGGAUCUCGACCUUGGAUGGCCUUGCUCCAAUUCAAUCUUUCAGAACCCA______AU__
...((((((.......))))))((((.....(((((((.(.((((...((((((((.....)))))))).)))).).))))))).))))............................... (-22.12 = -23.68 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:50 2006