Locus 3285

Sequence ID 2R_DroMel_CAF1
Location 11,214,523 – 11,214,641
Length 118
Max. P 0.953090
window5381

overview

Window 1

Location 11,214,523 – 11,214,641
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.00
Mean single sequence MFE -27.64
Consensus MFE -16.74
Energy contribution -17.26
Covariance contribution 0.52
Combinations/Pair 1.25
Mean z-score -1.89
Structure conservation index 0.61
SVM decision value 1.43
SVM RNA-class probability 0.953090
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11214523 118 - 20766785
AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGUAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCAAUAUGUUAGGUAAGUUUGGAUACAAUGAUAUU--AGAU
..........((.((((((.................(((((((.(((((....))))).)))))))((((.((.(((((((.....))).)).)).)).))))....)))))).--)).. ( -25.60)
>DroSec_CAF1 655 105 - 1
AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUUU-------------UU--AGAC
..((((...((((((((((...((.((.(....((.(((((((.(((((....))))).)))))))))..).)).))...)))))))..))).))))..-------------..--.... ( -25.20)
>DroSim_CAF1 642 105 - 1
AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAUGUGAGUUU-------------UU--AGAC
....((((((........)))))).((((((.(((((((((((.(((((....))))).))))..........((....)).))))))).))))))...-------------..--.... ( -25.80)
>DroYak_CAF1 663 114 - 1
AUACUCUUUCCUUAUAUCGAAAGAUCUCGCACAACAUGUGGCGCUGUUGCACCCAAUUCUGCCACAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUU-GGAUACAAUGA---U--AUAU
........(((....(((....)))(((((..(((((((((.(((((.(((........))).))))).))..((....)).)))))))..)))))..-)))........---.--.... ( -29.50)
>DroAna_CAF1 632 92 - 1
---------------AGUGGAAAAUCUGUCGCAGUUUAUGGCGUUGUUGCAGGCAACUUUGCCACAGUGACAAGUUUCGCCAUUACUUAAGGUAGGUUC-------------CUUGGGAA
---------------(((((.(((..((((((......(((((..((((....))))..)))))..))))))..)))..))))).(((((((......)-------------)))))).. ( -32.10)
>consensus
AUACUCUUUCCUUAUAUCGAAAGAUCUCGCAAAACAUGUGGCGCAGUUGCAUUCAAUUUUGCCAUAGUCCCAAGUUCCAGCGAUAUGUUAGGUGAGUUU_____________UU__AGAC
..((((......(((((((...((.((......((.(((((((..((((....))))..)))))))))....)).))...)))))))......))))....................... (-16.74 = -17.26 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:49 2006