Locus 3283

Sequence ID 2R_DroMel_CAF1
Location 11,213,434 – 11,213,544
Length 110
Max. P 0.982306
window5379

overview

Window 9

Location 11,213,434 – 11,213,544
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.97
Mean single sequence MFE -31.26
Consensus MFE -24.62
Energy contribution -26.38
Covariance contribution 1.76
Combinations/Pair 1.03
Mean z-score -2.52
Structure conservation index 0.79
SVM decision value 1.91
SVM RNA-class probability 0.982306
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11213434 110 - 20766785
CUCUGAAAUAUCGAUUAGCAAGAGCUAUUCGCACUCUUUGCAAAACAGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAGAAAACAUUUUUAAU----------GGGCCAAUUUCAAA
...((((((.(((..((((....)))).(((((....((((((......)))))).....)))))..)))....((((((.((((....)))).))----------))))..)))))).. ( -22.70)
>DroSec_CAF1 8357 117 - 1
GUCUGAAAUAUCGAUUAGCAA--GCUAUUCGCACUCUCCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUU-UUAAUGGGCACGAGUGGGCCAAUUUCAGA
.((((((((..(((.(((...--.))).)))(((((.........(((((((((......)))))))))....(((((((((((....))-)).))))))).))))).....)))))))) ( -35.10)
>DroSim_CAF1 8456 118 - 1
GUCUGAAAUAUCGAUUAGCAA--GCUAUUCGCACUCUCCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUUUAAUGGGCACGAGUGGGCCAAUUUCAGA
.((((((((..(((.(((...--.))).)))(((((.........(((((((((......)))))))))....(((((((.((((....)))).))))))).))))).....)))))))) ( -35.90)
>DroEre_CAF1 7925 118 - 1
GUCUGAAAUAGCGAUUAGCAA--GCAAUUUGCACUCUUCGCAAAACGGGUUGCAAUUUAAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUAUAAUGUGCAUGAGUGGGGCAAAUUCAAA
((((......((.....))..--........(((((..((((...(((((((((......))))))))).......(((((((.....)))))))))))...)))))))))......... ( -31.10)
>DroYak_CAF1 9530 118 - 1
GUCUGAAAUAUCGAUUAGCAA--GCUAUUUGCACUCUGCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUAUAAUUGGCACGAGUGGGCCAAUUUCCAG
....(((((..(((.(((...--.))).)))((((((((.(((..(((((((((......))))))))).......(((((((.....))))))))))))).))))).....)))))... ( -31.50)
>consensus
GUCUGAAAUAUCGAUUAGCAA__GCUAUUCGCACUCUCCGCAAAACGGGUUGCAAUUUCAUGCGAUCCGAACUUGUUUAUAAAAAACAUUUUUAAUGGGCACGAGUGGGCCAAUUUCAAA
...((((((..(((.((((....)))).)))(((((...((....(((((((((......)))))))))....(((((.....)))))..........))..))))).....)))))).. (-24.62 = -26.38 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:47 2006