| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,208,546 – 11,208,651 |
| Length | 105 |
| Max. P | 0.889621 |
| Location | 11,208,546 – 11,208,651 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.14 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -13.98 |
| Energy contribution | -13.66 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11208546 105 + 20766785 GCCCCGGAGUUUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUAGAAGGGCAAUGCUAAUUAAUUGAAAUUAAAUGCUGUGC-------AUAGUU----AU----AUAUACUACAGAUC ((((...((((((.....(((((......)))))....))))))....)))).........................(((((.-------(((...----..----.)))..)))))... ( -15.60) >DroSec_CAF1 3876 81 + 1 GCCCCGGAGUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCGGAGGGCAAUGCUUAUUAAUGGAAAUUAAAUGC---------------------------------------AUU (((((.(((((((.....(((((......)))))....))))))).).))))(((((...(((((....)))))..))---------------------------------------))) ( -27.30) >DroSim_CAF1 3932 81 + 1 GCCCCGGAGUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCGGAGGGCAAUGCUGAUUAAUUGAAAUUAAUGAC---------------------------------------AUU (((((.(((((((.....(((((......)))))....))))))).).))))((((.(.((((((....)))))).))---------------------------------------))) ( -23.50) >DroEre_CAF1 5155 120 + 1 GCUUGGGACUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCAGAGGGUAAUGCAGAUUAGUGGGUUUUAAAUGCUGAACGAUCUUCUUAGCUUGCAAUACUGUUAUAUUACCGAUC .(((..((.((((.....(((((......)))))....)))).)).)))(((((((((((((.(..((((.......(.....)........))))..)))).))))...)))))).... ( -22.66) >DroYak_CAF1 4298 120 + 1 GCUUGGGAAUCUAUACAUAUGUGCCAAAUUACUUUAAUUGGAUUCGAAGGGCAUUGCAGCUUAAUGCCAACUAAAUGCUGAAUUCUGUUCUUAGCUUGCAAUACUUUUCUAUUACCGAAC ..(((((((((((.......(((......)))......)))))))((((((.((((((((.....)).........(((((.........))))).)))))).)))))).....)))).. ( -26.92) >consensus GCCCCGGAGUCUAUACAUAUGUGCCAAAUUACAUUAAUUGGAUUCGGAGGGCAAUGCUGAUUAAUGGAAAUUAAAUGCUG___________UAG_U____AU_____U_UA_UAC_GAUC ((((..(((((((.....(((((......)))))....)))))))...)))).................................................................... (-13.98 = -13.66 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:45 2006