Locus 3275

Sequence ID 2R_DroMel_CAF1
Location 11,188,664 – 11,188,760
Length 96
Max. P 0.938016
window5371

overview

Window 1

Location 11,188,664 – 11,188,760
Length 96
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 68.19
Mean single sequence MFE -23.90
Consensus MFE -6.90
Energy contribution -8.36
Covariance contribution 1.46
Combinations/Pair 1.11
Mean z-score -2.24
Structure conservation index 0.29
SVM decision value 1.27
SVM RNA-class probability 0.938016
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11188664 96 - 20766785
AUAAGACCACAAUCCAUGAUAUAUGUACGUAUGUACCACUCUCGAAAGGUUGACGUA--------AAUCAACAGUCUUUAAUGGGCUGUAAGGGCUUAAGGUCU------
...(((((..(((((.((((.....(((((....(((..........)))..)))))--------.))))(((((((.....)))))))..))).))..)))))------ ( -24.50)
>DroSec_CAF1 103252 92 - 1
AUAAGACCACAACCCAUGAUAUAUGU----AUGUACCACUCUCGAAAGGUUGAUGUA--------AAUCAACAGGCUUUAAUGGGCUGUAAGGGCUUAAGGUCU------
...(((((..(((((.((((.(((((----....(((..........)))..)))))--------.))))((((.((.....)).))))..))).))..)))))------ ( -23.50)
>DroSim_CAF1 102266 83 - 1
AUAAGACCACAACCCAUGAUAUAUGU----CUGUACCACUCUCGAAAGGUUGAUGUA--------AAUCAACAGACUUUAAUGG---------GCUUAAGGUCU------
...(((((..(((((((.......((----((((.......((....)).((((...--------.))))))))))....))))---------).))..)))))------ ( -24.00)
>DroEre_CAF1 105685 86 - 1
AUAAGCC--------AUCUC----------AUAUACAACUCUCGAAAGGUUGAUGUACAUACAUAGAUCAACAGGCUUUAAUGGGCUGUAAGGGCUUAAGGUCU------
.((((((--------.....----------...((((.(..((....))..).)))).............((((.((.....)).))))...))))))......------ ( -20.00)
>DroAna_CAF1 110393 88 - 1
AUAAGCUUCGUACUUAUGAUA------------UGCCACUCUCGAAAGUUGGCGGCA--------AAUCAUACGG-UUUUAUGGGCUCAGAGGGCUUAAG-UCACUCGUA
...(((((...(((((((((.------------((((.((..(....)..)).))))--------.)))))).))-).....)))))..((((((....)-)).)))... ( -27.50)
>consensus
AUAAGACCACAACCCAUGAUAUAUGU____AUGUACCACUCUCGAAAGGUUGAUGUA________AAUCAACAGGCUUUAAUGGGCUGUAAGGGCUUAAGGUCU______
..........................................(....)((((((............)))))).(((((((...((((.....)))))))))))....... ( -6.90 =  -8.36 +   1.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:39 2006