Locus 3274

Sequence ID 2R_DroMel_CAF1
Location 11,187,280 – 11,187,375
Length 95
Max. P 0.679594
window5370

overview

Window 0

Location 11,187,280 – 11,187,375
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.80
Mean single sequence MFE -17.02
Consensus MFE -12.59
Energy contribution -12.62
Covariance contribution 0.03
Combinations/Pair 1.08
Mean z-score -1.40
Structure conservation index 0.74
SVM decision value 0.30
SVM RNA-class probability 0.679594
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11187280 95 + 20766785
UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAUUAAAGAUAGACUA-UACUAUAUGUACAUAUGUAUGC
.(((..............(((((.(((((((.....-..))))))).....))))).((.....))...)))((-(((.((((....))))))))). ( -18.00)
>DroSec_CAF1 101866 93 + 1
UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAU-AAAGAUAGACUA-UACUAUAUGUGUAUAUAC-UAU
.(((..............(((((.(((((((.....-..))))))).....))))).((..-..))...)))((-(((.....))))).....-... ( -17.40)
>DroSim_CAF1 100903 93 + 1
UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAU-AAAGAUAGACUA-UACUAUAUGUGUAUAUAC-UAU
.(((..............(((((.(((((((.....-..))))))).....))))).((..-..))...)))((-(((.....))))).....-... ( -17.40)
>DroEre_CAF1 104241 78 + 1
UGUCAAACAAAACGAAUCGGUUUGUGGCAGAGUUAA-AGCUUGCCAAAGUAAAACCACUAU-AACGAUAGACU-UUACU----------------AU
..................(((((.(((((.(((...-.)))))))).....))))).((((-....))))...-.....----------------.. ( -14.80)
>DroYak_CAF1 101876 79 + 1
UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA-AGUUUGCCAAAGUAAAACCACUAU-AAAGAUAGACUAUUACU----------------AU
.(((..............(((((.(((((((.....-..))))))).....))))).((..-..))...))).......----------------.. ( -14.90)
>DroAna_CAF1 109001 85 + 1
UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAAAAGUUUGCCAAAGCCAAACUACUAU-AUGCA----C-----CUAAAAGUACAUAUAC--GU
...........(((....(((((.(((((((.(....).)))))))))))).......(((-(((.(----(-----......)).)))))))--)) ( -19.60)
>consensus
UGUCAAACAAAGCGAAUCGGUUUGUGGCAGAGUCAA_AGUUUGCCAAAGUAAAACCACUAU_AAAGAUAGACUA_UACUAUAUGU__AUAUAC__AU
..................(((((.(((((((........))))))).....)))))......................................... (-12.59 = -12.62 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:38 2006