Locus 3268

Sequence ID 2R_DroMel_CAF1
Location 11,173,631 – 11,173,731
Length 100
Max. P 0.816660
window5362

overview

Window 2

Location 11,173,631 – 11,173,731
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 84.20
Mean single sequence MFE -35.17
Consensus MFE -28.04
Energy contribution -28.32
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -2.28
Structure conservation index 0.80
SVM decision value 0.67
SVM RNA-class probability 0.816660
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11173631 100 - 20766785
CUUUAUUUAUUUUCAAUUAGGUGCCACCGUGCUAGGCGCCCACUAUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCACCACCGCCGCCGCACACG
...................((.....))((((..((((.......((((((..((.(((((.....))))).))..))))))....))))...))))... ( -36.50)
>DroSec_CAF1 88179 100 - 1
CUUUAUUUAUUUUCAAUUAGGUGCCACAGUUCUAGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCACCACCGCCGCCGCACACG
...................((((((.........)))))).....((((((..((.(((((.....))))).))..)))))).....((....))..... ( -33.10)
>DroSim_CAF1 88157 100 - 1
CUUUAUUUAUUUUCAAUUAGGUGCCACCGUGCUAGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCUCCACCGCCGCCGCACACG
...................((.....))((((..((((........(((((..((.(((((.....))))).))..))))).....))))...))))... ( -35.62)
>DroEre_CAF1 90743 100 - 1
GUUUAUUUGUUUUCCACUAGGUGCCACAGUACUGGGCGCCCAUUUCGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCCCCACCGCCGCCACACACG
...................((((((.((....)))))))).....(((((((.....((((.....))))(((....)))....)))))))......... ( -34.40)
>DroYak_CAF1 88186 100 - 1
AUCUAUUUGUUUUUAAAUAGGUGCCACCGUGCUGGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCUCCGCCGCCGCCACACACA
(((((((((....)))))))))......(((.((((((........(((((..((.(((((.....))))).))..)))))........)))).))))). ( -39.09)
>DroAna_CAF1 96542 100 - 1
AUUUAUUUUUCUUUCAACAGGUGCCACUCUACUGGGCGCCCACUUUGGGGCCCCGUACGCAGCCUUUGGUGGAGCUCCCCCACCUCCACCUCCGCACACU
....................((((.....(((.((((.(((.....))))))).)))..........(((((((.........)))))))...))))... ( -32.30)
>consensus
CUUUAUUUAUUUUCAAUUAGGUGCCACCGUGCUAGGCGCCCACUUUGGCGGUCCCUUUCCGGCCUACGGAGCGGCCCCGCCACCACCGCCGCCGCACACG
...................((((((.........))))))......(((((..((.(((((.....))))).))..)))))................... (-28.04 = -28.32 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:30 2006