Locus 3255

Sequence ID 2R_DroMel_CAF1
Location 11,116,665 – 11,116,758
Length 93
Max. P 0.671030
window5340

overview

Window 0

Location 11,116,665 – 11,116,758
Length 93
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 89.15
Mean single sequence MFE -38.85
Consensus MFE -35.85
Energy contribution -35.72
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.92
SVM decision value 0.29
SVM RNA-class probability 0.671030
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11116665 93 + 20766785
UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCCGCCGCUCUU-------------
.(((((..((.(((((((((((((((((((((((((....)))))...)).))))(....).)))))....))).)))))).)))))))....------------- ( -38.30)
>DroSec_CAF1 28594 103 + 1
UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCUGCCGCUCCUCUGCCGC---UCC
.(((((..((.((((((((((....(((((((((((....)))))...)).))))(((.(.((..........)).).))))))).)))))).)))))))---... ( -39.30)
>DroSim_CAF1 27170 104 + 1
UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCCGCCGCUCCUCCGCCGCUCCU--
...((..((((((((.((.(((..((.(((((((((....)))))........(((((............))))).))))))..)))))..))))))))..)).-- ( -39.90)
>DroEre_CAF1 30677 104 + 1
UGUGGUCUGCUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCAGCCACUCCGCUGCCACUCCUCUGCCGCUCCG--
.(((((.....(((((((((.....(((((((((((....)))))...)).))))(((...(((........)))...))).))).))))))...)))))....-- ( -37.90)
>consensus
UGUGGUCUGGUGGAGUGCAGGUUAAGUGGGCUCCAGACUUCUGGACACGCUCCGCGGAUCCGUUAACACCUCUGCCGCUCCUCCGCCGCUCCUCUGCCGC___U__
.(((((..((.(((((((((((((((((((((((((....)))))...)).))))(....).)))))....))).)))))).)))))))................. (-35.85 = -35.72 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:08 2006