| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,095,274 – 11,095,370 |
| Length | 96 |
| Max. P | 0.998194 |
| Location | 11,095,274 – 11,095,370 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 69.41 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -15.92 |
| Energy contribution | -16.17 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.66 |
| SVM decision value | 3.03 |
| SVM RNA-class probability | 0.998194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11095274 96 - 20766785 UUGUGCAUUUUUGCGCAUACCUUUGGCA--UUUUGGCAAAGUCAAAGGUCGCACCACCAGCACCACCGCCAAUGGUGGCAUCACACACCAGCCCCA-CC .((((((....)))))).....(((((.--.((((((...))))))(((.((.......)))))...)))))(((((........)))))......-.. ( -29.20) >DroVir_CAF1 11428 78 - 1 UUGUGCAUUUUUGCGCAUACCUUUGGCAGUUUUUGGCAAAGUCAAAGGUCUGCGCGCCC------CCCCUCUUU--------------GAACCGCC-CU ............(((((.(((((((((.((.....))...))))))))).)))))....------.........--------------........-.. ( -21.60) >DroSec_CAF1 7729 74 - 1 UUGUGCAUUUUUGCGCAUACCUUUGGCA--UUUUGGCAAAGUCAAAGGUCGCACCACCAGCACC----------------------ACCAGCCCCA-CC .((((((....)))))).......(((.--.((((((...))))))(((.((.......)))))----------------------....)))...-.. ( -19.50) >DroMoj_CAF1 12823 82 - 1 UUCUGCAUUUUUGCGCAUACCUUUGGCAGUUUUUGGCAAAGUCAAAGGUCUGCCCGGCCCGG---CCCCCGUUU--------------GAGCCGCCCCU ....(((....)))(((.(((((((((.((.....))...))))))))).)))..((..(((---(.(......--------------).))))..)). ( -25.90) >consensus UUGUGCAUUUUUGCGCAUACCUUUGGCA__UUUUGGCAAAGUCAAAGGUCGCACCACCAGCA___CCCCC_UUU______________CAGCCCCA_CC .((((((....)))))).(((((((((.............))))))))).................................................. (-15.92 = -16.17 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:00 2006