| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,092,413 – 11,092,513 |
| Length | 100 |
| Max. P | 0.549161 |
| Location | 11,092,413 – 11,092,513 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.38 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -15.40 |
| Energy contribution | -15.27 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11092413 100 - 20766785 GGCGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG----------UGAGUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCCAGCCAGUCGAGA (((......((....))...............((((..----------((((((((((((...((.....))....)))))).)))))).)))).....)))........ ( -23.10) >DroPse_CAF1 5243 93 - 1 ---GAUGCAUAGAAAUAAAAAGCGAG------UGGCAGAAGCACUCACUGUCUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCGUUCGAGCCAAUCGAGCC-------- ---...((((..........((.(((------((.......))))).))...(((((....)))))..))))(((......)))((((((.....)))))).-------- ( -26.60) >DroSim_CAF1 3410 98 - 1 GGCGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG----------UGAGUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGCCAGUCGA-- (((...((.((....))..............(((((.(----------(..((((((....))))))...)).)))))...))...((((.....)))))))......-- ( -24.00) >DroYak_CAF1 4952 91 - 1 GGCGAUGCAUAGAAAUAAAAAUAAAGAACCAGUGGCAG----------UGAGUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGC--------- (((......((....))..............(((((.(----------(..((((((....))))))...)).)))))...))).(((((.....))))).--------- ( -22.90) >DroAna_CAF1 5510 92 - 1 GCAGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG----------CGACUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGUC-------- (((.((((.((....))..(((((((...((((.(...----------).)))))))))))..))))..)))(((......)))((((((.....)))))).-------- ( -22.40) >DroPer_CAF1 5210 99 - 1 ---GAUGCAUAGAAAUAAAAAGCGAGUAACUGUGGCAGAAGCACUCACUGUCUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCGUUCGAGCCAAUCGAGCC-------- ---...((((..........((.((((..((........)).)))).))...(((((....)))))..))))(((......)))((((((.....)))))).-------- ( -23.80) >consensus GGCGAUGCAUAGAAAUAAAAAUAAAGACCCAGUGGCAG__________UGACUGCUUUAUUAAGCAUAAUGCGGCCAUAAAGCCAUUCGAGCCAAUCGAGCC________ ......((.((....))...............((((................(((((....)))))......(((......)))......)))).....))......... (-15.40 = -15.27 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:00 2006