Locus 3244

Sequence ID 2R_DroMel_CAF1
Location 11,081,926 – 11,082,046
Length 120
Max. P 0.835438
window5328

overview

Window 8

Location 11,081,926 – 11,082,046
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.77
Mean single sequence MFE -41.80
Consensus MFE -27.00
Energy contribution -27.33
Covariance contribution 0.34
Combinations/Pair 1.30
Mean z-score -1.75
Structure conservation index 0.65
SVM decision value 0.73
SVM RNA-class probability 0.835438
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11081926 120 - 20766785
CUUUGCAACAGAUCAGGAUUCGUGGUGAGGCUGAGGCCUUUGCCAUUGCGGCCAAGGCUAAAGCAGAGGCCGAGCAGAUGGCCAUGAAGGCAGAGGCCUAUCGUGAGUACCGUGAGGCUG
........(((.((((((((((((((.(((((...((((((((((((.(((((...((....))...)))))....))))))...))))))...)))))))))))))).)).)))..))) ( -52.60)
>DroVir_CAF1 264 114 - 1
------UGCAGAUAAAGAUACGCGGUGAAGCCGAAGCAUUUGCCAUUGCUGCCAAGGCUAAGGCUGAGGCUGAGCAAAUGGCGCAGAAGGCCGACGCUUGGCGUGAAUACCGCGAAGCCG
------..............(((((((..(((.((((.((.(((.((((.((((..(((..(((....))).)))...))))))))..))).)).))))))).....)))))))...... ( -42.60)
>DroGri_CAF1 410 117 - 1
---UAUUGCAGAUUAAAAUCCGUGGCGAAGCUGAGGCGUUUGCCAUUGCGGCCAAGGCAAAGGCUGAGGCCGAGCAAAUGGCACAGAAGGCCGAUGCCUAUCGUGAAUAUCGUGAGGCUG
---....((((((....))).((((((((((....)).)))))))))))((((.(((((..((((...((((......))))......))))..))))).(((((.....))))))))). ( -40.80)
>DroWil_CAF1 273 119 - 1
-UAUCUUGUAGAUCAAAAUACGUGGUGAGGCUGAGGCCUUUGCCAUUGCGGCCAAGGCCAAGGCUGAGGCAGAGCAAAUGGCCCAGAAAGCAGAAGCCUAUAGGGAAUAUCGGGAAGCAG
-..((((((((...........(((.(((((....))))).((((((((.(((..(((....)))..)))...)).)))))))))....((....))))))))))............... ( -37.30)
>DroMoj_CAF1 409 120 - 1
UGCUAUUAUAGAUCAAAAUACGUGGCGAAGCUGAAGCAUUUGCUAUUGCAGCUAAGGCUAAAGCAGAAGCAGAGCAAAUGGCACAGAAGGCAGAUGCUUGGCGUGAAUACCGCGAGGCCG
.......................(((...(((.(((((((((((.((...((((..(((...((....))..)))...))))...)).))))))))))))))(((.....)))...))). ( -36.50)
>DroAna_CAF1 430 120 - 1
CCUUCUUGCAGAUCAAAAUCCGUGGUGAGGCUGAAGCCUUUGCCAUUGCGGCCAAGGCCAAGGCGGAGGCGGAGCAGAUGGCCCAAAAGGCAGACGCAUGGCGCGAAUAUCGGGAAGCUG
.(((((((...((.....(((((.(((...(((..(((((((((.....(((....)))..)))))))))((.((.....))))......)))...))).))).))))..)))))))... ( -41.00)
>consensus
___UAUUGCAGAUCAAAAUACGUGGUGAAGCUGAAGCCUUUGCCAUUGCGGCCAAGGCUAAGGCUGAGGCAGAGCAAAUGGCCCAGAAGGCAGACGCCUAGCGUGAAUACCGCGAAGCUG
....................(((((((..((..((((.((((((.((..(((((..((....((....))...))...)))))..)).)))))).))))...))...)))))))...... (-27.00 = -27.33 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:57 2006