Locus 3243

Sequence ID 2R_DroMel_CAF1
Location 11,081,166 – 11,081,257
Length 91
Max. P 0.960717
window5326 window5327

overview

Window 6

Location 11,081,166 – 11,081,257
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 99.12
Mean single sequence MFE -16.30
Consensus MFE -16.30
Energy contribution -16.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 1.00
SVM decision value 1.52
SVM RNA-class probability 0.960717
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11081166 91 + 20766785
UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA
..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30)
>DroSec_CAF1 3986 91 + 1
UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA
..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30)
>DroSim_CAF1 1813 91 + 1
UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA
..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30)
>DroEre_CAF1 3931 89 + 1
UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUC--UCUGAGUGUGUGUGUAAAACAUGUUGCAAAA
..(((((((((((((......(((((.....)))))...((((.....))))......--..)))))))((((.....))))))))))... ( -16.30)
>DroYak_CAF1 2878 91 + 1
UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA
..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... ( -16.30)
>consensus
UGUGCAAUACACUUAUAUAAAUACAUUAUACAUGUAAUACAAAAUAUUUUUGCUCCUCUCUCUGAGUGUGUGUGUAAAACAUGUUGCAAAA
..(((((((((((((......(((((.....)))))...((((.....))))..........)))))))((((.....))))))))))... (-16.30 = -16.30 +   0.00)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 11,081,166 – 11,081,257
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 99.12
Mean single sequence MFE -16.84
Consensus MFE -16.88
Energy contribution -16.88
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 1.00
SVM decision value 0.77
SVM RNA-class probability 0.845285
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11081166 91 - 20766785
UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA
..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00)
>DroSec_CAF1 3986 91 - 1
UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA
..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00)
>DroSim_CAF1 1813 91 - 1
UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA
..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00)
>DroEre_CAF1 3931 89 - 1
UUUUGCAACAUGUUUUACACACACACUCAGA--GAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA
..........(((..(((((.....(((...--...)))...((((((.((((((.....)))))).))))))......)))))..))).. ( -16.20)
>DroYak_CAF1 2878 91 - 1
UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA
..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. ( -17.00)
>consensus
UUUUGCAACAUGUUUUACACACACACUCAGAGAGAGGAGCAAAAAUAUUUUGUAUUACAUGUAUAAUGUAUUUAUAUAAGUGUAUUGCACA
..........(((..(((((.....(((.....)))......((((((.((((((.....)))))).))))))......)))))..))).. (-16.88 = -16.88 +   0.00)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:55 2006