Locus 3242

Sequence ID 2R_DroMel_CAF1
Location 11,074,451 – 11,074,559
Length 108
Max. P 0.770029
window5325

overview

Window 5

Location 11,074,451 – 11,074,559
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.03
Mean single sequence MFE -34.41
Consensus MFE -29.86
Energy contribution -29.98
Covariance contribution 0.12
Combinations/Pair 1.13
Mean z-score -1.53
Structure conservation index 0.87
SVM decision value 0.53
SVM RNA-class probability 0.770029
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11074451 108 + 20766785
GUCGAAU------------AUACCGCCGUAUUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA
...(((.------------((((((.......))))))..)))((((((((((((((.(((.((((((.....(((........)))...))))))..))).)))....))))))))))) ( -35.50)
>DroSec_CAF1 21423 108 + 1
GUCGAAU------------AUACCGCCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA
...(((.------------((((((.......))))))..)))((((((((((((((.(((.((((((.....(((........)))...))))))..))).)))....))))))))))) ( -35.50)
>DroSim_CAF1 20957 108 + 1
GUCGAAU------------AUACCGCCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA
...(((.------------((((((.......))))))..)))((((((((((((((.(((.((((((.....(((........)))...))))))..))).)))....))))))))))) ( -35.50)
>DroYak_CAF1 21711 108 + 1
GUCGAAU------------GUGCCACCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUCUCGUGUGCCCUCACCUUCUGCUGCCUGAGAUUUUGCAUUUGGGUGUGCUGCGAGGCCAGGGA
...(((.------------(..(((.......)))..)..)))(((((((((......(((((.((...(((((..(((.............)))...))))).)))))))))))))))) ( -33.92)
>DroAna_CAF1 22889 120 + 1
CUCGAAUAUGUCUUCCCACAUACCGCCCUAUGUGGUGUUCUUCUUUCUGGCCUUCAUCUCCUGUGCGAUUACCUUCUGCUGCCUGAGAUUCUGCAUUUGGAUCUGUUUCGAGGCCAGACA
...(((((.......(((((((......)))))))))))).....(((((((((((..(((.((((((.....(((........)))..)).))))..)))..))....))))))))).. ( -31.61)
>consensus
GUCGAAU____________AUACCGCCCUACUUGGUGUUCUUCUUCCUGGCCUUCAUUUCCUGUGCGGUCACCUUCUGCUGCCUGAGAUUCUGCAUUUGGGUGUGCUUCGAGGCCAGGGA
.......................((((......))))......(((((((((((.(((((..((((((.......)))).))..)))))...((((......))))...))))))))))) (-29.86 = -29.98 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:53 2006