Locus 3241

Sequence ID 2R_DroMel_CAF1
Location 11,068,917 – 11,069,008
Length 91
Max. P 0.574571
window5324

overview

Window 4

Location 11,068,917 – 11,069,008
Length 91
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 80.27
Mean single sequence MFE -24.77
Consensus MFE -17.44
Energy contribution -17.80
Covariance contribution 0.36
Combinations/Pair 1.19
Mean z-score -1.22
Structure conservation index 0.70
SVM decision value 0.08
SVM RNA-class probability 0.574571
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11068917 91 - 20766785
AUCCCC----------------AUU------UCCAAUUGUUGUUCCUUUGUUGCCACUUGUUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GAAGGCAUUGCAAUUGA
......----------------...------..(((((((.((.((((((((((((.((..((((.......))))..)).)))))........))--))))).)).))))))). ( -26.10)
>DroSec_CAF1 15734 91 - 1
AUACCC----------------AUU------UCCAAUUGUUGUUCCUUUGUUGCCACUUGUUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GAAGGCAUUGCAAUUGA
......----------------...------..(((((((.((.((((((((((((.((..((((.......))))..)).)))))........))--))))).)).))))))). ( -26.10)
>DroSim_CAF1 15085 91 - 1
AUCCCC----------------AUU------UCCAAUUGUUGUUCCUUUGUUGCCACUUGUUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GAAGGCAUUGCAAUUGA
......----------------...------..(((((((.((.((((((((((((.((..((((.......))))..)).)))))........))--))))).)).))))))). ( -26.10)
>DroEre_CAF1 15822 90 - 1
AUCGUC----------------UUU------UACAAUGGUUGUUCCUUUGUUGCCACUUGAUGUCUG-GGUUGGCGUGGAUUGGUAAUUUGUUAGC--GGAGGCAUUGCAAUUGA
......----------------...------..((((.((.((.((((((((((((.((.(((((..-....))))).)).)))))........))--))))).)).)).)))). ( -23.40)
>DroYak_CAF1 15922 97 - 1
UUUGUA----------------UUUUAGAUUUACAAUGGUGGUUCCUUUGUUGCCACUUGAUGGCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC--GGAGGCAUUGCAAUUGA
......----------------...........((((.(..((.((((((((((((.((.(((.(.......).))).)).)))))........))--))))).))..).)))). ( -24.10)
>DroAna_CAF1 15938 109 - 1
AUUCACACAAGUACAAGUAAUCUUG------UCCAUUUCAAUUUUCUUUGUUGGCACUUGAUGUUUGAGGUUGGCGUGGAUUGGUAAUUUGUAAGACGGGGGCCAGUGCAAUUGA
...........(((((((.(((..(------(((((.((((((((...(((..(...)..)))...)))))))).)))))).))).)))))))...(((..((....))..))). ( -22.80)
>consensus
AUCCCC________________AUU______UCCAAUUGUUGUUCCUUUGUUGCCACUUGAUGCCUGAGGUUGGCGUGGAUUGGUAAUUUGUUAGC__GAAGGCAUUGCAAUUGA
.................................(((((((.((.((((((((((((.((..((((.......))))..)).)))))))..........))))).)).))))))). (-17.44 = -17.80 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:52 2006