Locus 3240

Sequence ID 2R_DroMel_CAF1
Location 11,066,492 – 11,066,596
Length 104
Max. P 0.818797
window5323

overview

Window 3

Location 11,066,492 – 11,066,596
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 98.72
Mean single sequence MFE -16.07
Consensus MFE -16.00
Energy contribution -16.33
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 1.00
SVM decision value 0.67
SVM RNA-class probability 0.818797
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11066492 104 - 20766785
AUUCUUUAUCAAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGAUUGAACUACCACCUGUGGAAGUGAUAUUUCUC
................(((((((.............................((((((((........))))))))(((.(((....))).))).))))))).. ( -17.50)
>DroSec_CAF1 13263 104 - 1
AUUCUUUAUCAAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGAUUGAACUACCACCUGUGGAAGUGAUAUUUCUC
................(((((((.............................((((((((........))))))))(((.(((....))).))).))))))).. ( -17.50)
>DroSim_CAF1 12608 104 - 1
AUUCUUUAUCGAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGUUUGAACUACCACCUGUGGAAGUGAUAUUUCUC
........(((....)))...(.((((((.......................((((.(((........))).))))(((.(((....))).))))))))).).. ( -13.20)
>consensus
AUUCUUUAUCAAAAUCGAAAUGUAAUAUCUAUAUAAACGCAUUAAAUACCAAUCAAUCAUCAGCUUAAAUGAUUGAACUACCACCUGUGGAAGUGAUAUUUCUC
................(((((((.............................((((((((........))))))))(((.(((....))).))).))))))).. (-16.00 = -16.33 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:51 2006