Locus 3238

Sequence ID 2R_DroMel_CAF1
Location 11,059,513 – 11,059,621
Length 108
Max. P 0.697826
window5321

overview

Window 1

Location 11,059,513 – 11,059,621
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.53
Mean single sequence MFE -47.08
Consensus MFE -35.89
Energy contribution -35.88
Covariance contribution -0.01
Combinations/Pair 1.38
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.34
SVM RNA-class probability 0.697826
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11059513 108 + 20766785
UCGGGCGUGCGGAAGACCUGCUGUUGCUGCUGCUGUAAGUGCUGCAGCUGGGGAGCGGCGGUGAAGAAUCGGUACGGCGCGGGCGUCACGGUCGGCGCCAACGUCUGU
.(((((((((.((......(((((((((.((((((((.....))))))..)).)))))))))......)).))))(((((.(((......))).)))))...))))). ( -50.80)
>DroPse_CAF1 6400 108 + 1
UCGGGCGUACGGAAGACCUGCUGAUGCUGCUGCUGCAGAUGUUGCAGCUGUGGGGCGGCAGUGAAAAAGCGGUACGGCGCCGGCGUUACAGUGGGCGCCAAUGUCUGG
.(((((((((.(....(((((((.(.(..(.(((((((...))))))).)..).))))))).)......).))))((((((.((......)).))))))...))))). ( -52.60)
>DroWil_CAF1 7088 108 + 1
UCGGGCGUGCGGAAGACCUGCUGAUGUUGCUGUUGCAGAUGCUGCAAUUGGGGGGCGGCUGUGAAGAAGCGAUAUGGCGUCGGCGUUACGGUUGGCGCCACUGUCUGC
.(((((..((((.....))))..((((((((.(..(((.((((.(......).)))).)))..)...))))))))(((((((((......)))))))))...))))). ( -45.40)
>DroMoj_CAF1 7000 99 + 1
UCUGGAGUACGAUAGACCUGCUGCUGCU------GCAGAUGCUGAAGC---GGCGAGGCAGUGAAGAAACGGUACGGCGCCGGUGUCACUGUGGGCGCCAAUGUCUGC
...(((((((....(.(((((((((...------((....))...)))---))).)))).((......)).))))((((((.(........).))))))....))).. ( -35.50)
>DroAna_CAF1 6508 108 + 1
UCGGGCGUGCGGAAGACCUGUUGCUGCUGCUGUUGCAAGUGUUGCAGCUGGGGGGCGGCGGUGAAGAAACGAUACGGCGCCGGCGUCACGGUGGGCGCCAACGUUUGU
.((((....(....).))))(..((((((((((((((.....)))))).....))))))))..)..(((((....((((((.((......)).))))))..))))).. ( -45.60)
>DroPer_CAF1 6404 108 + 1
UCGGGCGUACGGAAGACCUGCUGAUGCUGCUGCUGCAGAUGUUGCAGCUGUGGGGCGGCAGUGAAAAAGCGGUACGGCGCCGGCGUUACAGUGGGCGCCAAUGUCUGG
.(((((((((.(....(((((((.(.(..(.(((((((...))))))).)..).))))))).)......).))))((((((.((......)).))))))...))))). ( -52.60)
>consensus
UCGGGCGUACGGAAGACCUGCUGAUGCUGCUGCUGCAGAUGCUGCAGCUGGGGGGCGGCAGUGAAGAAGCGGUACGGCGCCGGCGUCACGGUGGGCGCCAAUGUCUGC
.(((((((.(....).(((((((.(.((.(.(((((((...))))))).).)).))))))).)............((((((.((......)).)))))).))))))). (-35.89 = -35.88 +  -0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:49 2006