Locus 3235

Sequence ID 2R_DroMel_CAF1
Location 11,054,641 – 11,054,731
Length 90
Max. P 0.767510
window5315

overview

Window 5

Location 11,054,641 – 11,054,731
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 87.33
Mean single sequence MFE -20.78
Consensus MFE -16.76
Energy contribution -17.40
Covariance contribution 0.64
Combinations/Pair 1.23
Mean z-score -2.38
Structure conservation index 0.81
SVM decision value 0.52
SVM RNA-class probability 0.767510
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11054641 90 - 20766785
UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGUUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU
.........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -19.50)
>DroSec_CAF1 1473 90 - 1
UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACUUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU
.........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.90)
>DroSim_CAF1 1169 90 - 1
UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU
.........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.90)
>DroEre_CAF1 1479 90 - 1
UUCUUUUCCGGCUUUGAGUGCAGACACAAACAACUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU
.........(((..(((((((((..........))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.30)
>DroYak_CAF1 1475 90 - 1
UUCUUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACCUUCUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU
.........(((..(((((((((.(.......)))))))....)))..))).......(((.(((..((((.....))))..))).))). ( -21.90)
>DroAna_CAF1 1661 87 - 1
CUCCU---CGGCUUUCAGAGAGGACAUGAACAGCUCAAGUUUUUCUUCGCCUAUUCCUUGCAGGUCUAUGCUGCCUGCUUUAAUCAACAU
.....---.(((....((((((.((.(((.....))).))))))))..)))........((((((.......))))))............ ( -18.20)
>consensus
UUCCUUUCCGGCUUUGAGUGCAGACACAAACAGCUGCACCUUUUCAUCGCCAAUCUCUUGGAGAUCCGAGUUUUCCGCUUUUAUCACCAU
.........(((..(((((((((..........))))))....)))..))).......(((.(((..((((.....))))..))).))). (-16.76 = -17.40 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:43 2006