Locus 323

Sequence ID 2R_DroMel_CAF1
Location 2,127,734 – 2,127,888
Length 154
Max. P 0.975445
window657 window658

overview

Window 7

Location 2,127,734 – 2,127,854
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.58
Mean single sequence MFE -23.40
Consensus MFE -22.24
Energy contribution -22.24
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.95
SVM decision value 1.75
SVM RNA-class probability 0.975445
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2127734 120 + 20766785
ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUAAACUCGGCCG
......................(((((((((..((((((....).(((...(((((((.....))))))))))))))))))))..........((((........))))......)))). ( -22.80)
>DroSec_CAF1 106405 120 + 1
ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAACCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG
......................(((((((((..((((((....).......(((((((.....)))))))...))))))))))......((..((((........))))....)))))). ( -22.60)
>DroSim_CAF1 110358 120 + 1
ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG
......................(((((((((..((((((....).(((...(((((((.....))))))))))))))))))))......((..((((........))))....)))))). ( -23.30)
>DroEre_CAF1 105125 120 + 1
ACUUUUCCAUUACAGAAAAUAUGGCUUCCAACUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG
..(((((.......)))))...(((((((((((..((((....).(((...(((((((.....))))))))))))))))))))......((..((((........))))....)))))). ( -24.50)
>DroYak_CAF1 107461 120 + 1
AAUUUGCCAUUACAGAAAAUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUCAACUCGGCCG
..((((......))))......(((((((((..((((((....).(((...(((((((.....))))))))))))))))))))......(((((...........))))).....)))). ( -23.80)
>consensus
ACUUUUCCAUUACAGAAACUAUGGCUUCCAAUUCUUGCGGCAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCG
......................(((((((((..((((((....).......(((((((.....)))))))...))))))))))......((..((((........))))....)))))). (-22.24 = -22.24 +   0.00)

alignment

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secondary structure

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dotplot

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Window 8

Location 2,127,774 – 2,127,888
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -22.62
Consensus MFE -21.64
Energy contribution -21.64
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.18
Structure conservation index 0.96
SVM decision value 0.03
SVM RNA-class probability 0.551079
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2127774 114 + 20766785
CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUAAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC
((((.((....(((((((.....)))))))....)).))))........................(((((.(((((...((((((....).)))))..))))).)))))..... ( -22.50)
>DroSec_CAF1 106445 114 + 1
CAACAUGAACUUUGUUAAUCCACUUAACAACCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC
((((.((....(((((((.....)))))))....)).))))........................((((..(((((...((((((....).)))))..)))))..))))..... ( -21.70)
>DroSim_CAF1 110398 114 + 1
CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC
((((.((....(((((((.....)))))))....)).))))........................((((..(((((...((((((....).)))))..)))))..))))..... ( -22.40)
>DroEre_CAF1 105165 114 + 1
CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACAUAGGAUACUUAAUGAGUCUGCAGAUAGC
((((.((....(((((((.....)))))))....)).))))(((((((((((((....))))...(((((.((((....)))).)))))....)))..)))))).......... ( -24.00)
>DroYak_CAF1 107501 114 + 1
CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUCAACUCGGCCGAGUACCUUGGAUACUUAAUGAGUCUGCAGAUAGC
((((.((....(((((((.....)))))))....)).))))((((((..(((((...........))))).......(((((...)))))........)))))).......... ( -22.50)
>consensus
CAACAUGAACUUUGUUAAUCCACUUAACAAUCAGCAAGUUGGACUCAAAGAUAACAAAUUAUAUAUUGUGAACUCGGCCGAGUACCUAGGAUACUUAAUGAGUCUGCAGAUAGC
((((.((....(((((((.....)))))))....)).))))(((((((((...((((........))))..((((....))))..........)))..)))))).......... (-21.64 = -21.64 +   0.00)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:31 2006