Locus 3228

Sequence ID 2R_DroMel_CAF1
Location 11,015,158 – 11,015,261
Length 103
Max. P 0.610279
window5303

overview

Window 3

Location 11,015,158 – 11,015,261
Length 103
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.58
Mean single sequence MFE -29.33
Consensus MFE -13.78
Energy contribution -13.95
Covariance contribution 0.17
Combinations/Pair 1.41
Mean z-score -1.94
Structure conservation index 0.47
SVM decision value 0.16
SVM RNA-class probability 0.610279
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11015158 103 + 20766785
AUACCUAUGCCCAGAAACUGAAUGCCAAACUGCAUUUCAUAGAUACAUCGAAGUUGGGGGCCAAGAAGCCCAGCGUCC-------UGGAUAUAAUGAACUGGGUGAAUGA
........((((((......(((((......)))))((((..((((...((.((((((..........)))))).)).-------..).))).)))).))))))...... ( -24.50)
>DroSec_CAF1 127714 103 + 1
AUACCUAUGCCCAGAAACUGAAUGCCAAACUGCAGUUCAUAGAUACAGAGAAGUUGGGGGUCAAAAAGCCCAGCGUCC-------UAGACAUAAUGAACUGGGUGAAGGA
...(((.(((((((....(((((((......))).)))).......((.((.((((((..........)))))).)))-------)............))))))).))). ( -29.20)
>DroSim_CAF1 130016 103 + 1
AUACCUAUGCCCAGAAACUGAAUGCCAAACUGCAGUUCAUAGACACAGAGAAGUUGGGGGUCAAGAAGCCCAGCGUCC-------UGGAUAUAAUGAACUGGGUGAAGGA
...(((.((((((.........(((......)))((((((..(..(((.((.((((((..(....)..)))))).)))-------))..)...)))))))))))).))). ( -33.00)
>DroEre_CAF1 131010 103 + 1
ACACCUACGUCCAGAGACUGAAUGCCAAGCUGCAGUUUAUAGAUACAAUGGAGUUCGGGGUCAAGAAGGCCAGCGUCU-------UGGAUGUAAUGAAGUGGGCUAAGGA
...(((..(((((.((((((...((...))..)))))).....((((.(.(((..((.((((.....))))..)).))-------).).))))......)))))..))). ( -27.60)
>DroYak_CAF1 133011 103 + 1
ACACCUAUGCCCAGAGACUGAAUGCCAAAUUGCAGUUUAUAAAUAUAACGGAGUUCGGGGUCAAGAAGGCCAGUGUCA-------UGGAUAUAAUGAAAUGGGCUAAGGA
...(((..(((((.(((((((((.....))).))))))...............((((.((((.....)))).(((((.-------..)))))..)))).)))))..))). ( -25.30)
>DroPer_CAF1 127442 106 + 1
AUAGCUUCGCCCAGAAGGUGAAUGCAACCUUGGACUUUCGUUCCGUAAGGAAGGAUGG---CGAGAAGA-CAGAGUCCGUAUUUAAGGACAUAGUAAGAUGGGUGAAGGA
....(((((((((.(((((.......))))).(.((.((.((((....)))).)).))---).......-....((((........)))).........))))))))).. ( -36.40)
>consensus
AUACCUAUGCCCAGAAACUGAAUGCCAAACUGCAGUUCAUAGAUACAAAGAAGUUGGGGGUCAAGAAGCCCAGCGUCC_______UGGAUAUAAUGAACUGGGUGAAGGA
...(((.((((((.....(((...((.((((....................)))).))..)))...........((((........)))).........)))))).))). (-13.78 = -13.95 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006