Locus 3216

Sequence ID 2R_DroMel_CAF1
Location 10,977,165 – 10,977,270
Length 105
Max. P 0.810604
window5289

overview

Window 9

Location 10,977,165 – 10,977,270
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 89.40
Mean single sequence MFE -32.06
Consensus MFE -22.32
Energy contribution -21.84
Covariance contribution -0.48
Combinations/Pair 1.16
Mean z-score -2.60
Structure conservation index 0.70
SVM decision value 0.65
SVM RNA-class probability 0.810604
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10977165 105 - 20766785
UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGAAUACAGUGCAAAAAAAAAAUCGAGUAACAAAGAGCGCUAAUGCUU
......(((((((..(((((.((.......)).)))))........(((((....)))))...))))))).....................(((((....))))) ( -35.50)
>DroSec_CAF1 89480 103 - 1
UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGCAUACAGUG--AAAAUAAAAUCAAGUAACAAAGAGCGCUAAUGUUU
...(((......)))(((((.((.......)).)))))((((...(.((((....))))).(((..((--(........))).))).......))))........ ( -29.50)
>DroSim_CAF1 91810 103 - 1
UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGCAUACAGUG--AAAAUAAAAUCAAGUAACAACGAGCGCUAAUGUUU
...(((......)))(((((.((.......)).)))))((((...(.((((....))))).(((..((--(........))).))).......))))........ ( -29.50)
>DroEre_CAF1 91956 102 - 1
UAGUCCUGGACUGGAGCUGCGGCACAAACAGUGGCAGUGUGCAAAGUCCCGGGAGCGG-GAUACAGUG--AAAAUAAAAUAGAGCAACCGGCAGCUCUAAUGCUC
.((((...))))(((((((((.(((.....))).).(..(((...((((((....)))-)))...((.--...))........)))..).))))))))....... ( -34.60)
>DroYak_CAF1 93524 103 - 1
UAGUCCUGAACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAGCGGGGAUACAGUG--CAAAAAAAAUAGAGUAACAAUCAGCUCUAAUGUCU
...(((......)))(((((.((.......)).))))).((((...(((((....)))))......))--)).......((((((........))))))...... ( -31.20)
>consensus
UAGUCCUGCACUGGAGCUGCGGCAUAAACAGUGGCAGUGUGCAAAGUCCCGGAAACGGGCAUACAGUG__AAAAUAAAAUCGAGUAACAAAGAGCGCUAAUGUUU
.......((((((..(((((.((.......)).))))).........((((....))))....))))................((........))))........ (-22.32 = -21.84 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:16 2006