Locus 3210

Sequence ID 2R_DroMel_CAF1
Location 10,961,783 – 10,961,879
Length 96
Max. P 0.581004
window5279

overview

Window 9

Location 10,961,783 – 10,961,879
Length 96
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 74.90
Mean single sequence MFE -26.38
Consensus MFE -7.63
Energy contribution -9.05
Covariance contribution 1.42
Combinations/Pair 1.18
Mean z-score -2.35
Structure conservation index 0.29
SVM decision value 0.09
SVM RNA-class probability 0.581004
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10961783 96 - 20766785
UGCAUACUCGU---ACA----------UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC-CCACAUUGGCUGCUAUCUACUUAAUU
(((((((((((---(((----------(((......))))))))))))))....((((((.....)))))).)))((((.(((-(......))))....)).))...... ( -29.50)
>DroSec_CAF1 74128 96 - 1
UGCAUACUCGU---ACA----------UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC-CCACAUUGGCUGCUAUCUACUUAAUU
(((((((((((---(((----------(((......))))))))))))))....((((((.....)))))).)))((((.(((-(......))))....)).))...... ( -29.50)
>DroSim_CAF1 76414 96 - 1
UGCAUACUCGU---ACA----------UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC-CCACAUUGGCUGCUAUCUACUUAAUU
(((((((((((---(((----------(((......))))))))))))))....((((((.....)))))).)))((((.(((-(......))))....)).))...... ( -29.50)
>DroEre_CAF1 76443 101 - 1
UGCAUACCCGU---ACAUGU------GUGCAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCACUGAGGGCCCCACAUUGGCUGCUAUCUACUUAAUU
(((((((((((---((((((------.((....)).))))))))))))))....((((((.....)))))).)))..((.(((.((.....))..))).))......... ( -34.10)
>DroAna_CAF1 74387 100 - 1
UUAAUAUCCUC---CCAUUUCUCACCGUGUAUGCAUAUG------AGUAUAUUAUAUACAUAUCACGUAUACGCAGUGUUGGC-UCACAUUGGCUGCUAUCUACUUAAUU
...........---...........((((((((.(((((------(.....)))))).)))).)))).....(((((..((..-...))...)))))............. ( -18.20)
>DroPer_CAF1 69545 78 - 1
CACACACUCUUUUGACA----------UGCAUAGAUAUGAAUACAUGUG-----UG-------CACGUUUACG---------U-GUACAUUGGCUGCUAUCUGCUUAAUU
.................----------....((((((.(....((.(((-----((-------((((....))---------)-))))))))....)))))))....... ( -17.50)
>consensus
UGCAUACUCGU___ACA__________UGUAUGCAAAUGUGUGCGGGUAUAUAAUGUACGUAUCACGUAUACGCAGUGAGGGC_CCACAUUGGCUGCUAUCUACUUAAUU
............................(((.((.((((((.............((((((.....))))))..............)))))).)))))............. ( -7.63 =  -9.05 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:07 2006