| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,955,733 – 10,955,836 |
| Length | 103 |
| Max. P | 0.641975 |
| Location | 10,955,733 – 10,955,836 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.68 |
| Mean single sequence MFE | -21.39 |
| Consensus MFE | -12.45 |
| Energy contribution | -13.73 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10955733 103 - 20766785 AACAGUUGUCAAUUUCUGGUGGCGCAAAUAUUUUUUCCCAUUUCGCCUUUUUUCCCUCCAAGAGGCUCACUUGGCCCGCACUUCUGUUGACUUCUAUUCCAUU ...((..((((((.....((((.((...................(((((((........))))))).(....)))))))......))))))..))........ ( -21.40) >DroVir_CAF1 89719 91 - 1 AACAGUUGUCAAUUUCUGGCAGCGCAAAUAUUUUUUCGCAU-UCGCCUUUUG-CACUUGCCGA----------GCCGACACUUAUGUUGACUUCAGUUCUUUU ((((..((((...(((.(((((((.(((....))).)))..-..((.....)-)...))))))----------)..))))....))))............... ( -16.60) >DroPse_CAF1 64348 102 - 1 AACAGUUGUCAAUUUCUGGCAGUGCAAAUAUUUUUUCACAUCUCGCCUUUUCGCACUCGGAGAGGCUCUCUCG-UCCACACUUCUGUUGACUUCUAUGCCAUU ................((((((((.(((....))).))).....(((((((((....)))))))))......(-((.(((....))).))).....))))).. ( -25.30) >DroGri_CAF1 87526 91 - 1 AACAGUUGUCAAUUUCUAGCAGCGCAAAUAUUUUUUCGCCU-UCGCCUUUUU-CACUUGUCGG----------CCCGGCACUUAUGUUGACUUCAGUUCCUUU ....(..((((((.....((.(((.(((....))).)))..-..(((.....-........))----------)...))......))))))..)......... ( -13.12) >DroAna_CAF1 68845 103 - 1 AACAGUUGUCAAUUUCUGGCAGGGCAAAUAUUUUUUCCCAUUUCGCCUUUUCGCAUUCGGAGAGGCUCACUUGGCCCCCACUUCUGUUGACUUCUAUUCCAUU ...((..((((((...(((..((((...................(((((((((....))))))))).(....)))))))).....))))))..))........ ( -26.60) >DroPer_CAF1 65011 102 - 1 AACAGUUGUCAAUUUCUGGCAGUGCAAAUAUUUUUUCACAUCUCGCCUUUUCGCACUCGGAGAGGCUCUCUCG-UCCACACUUCUGUUGACUUCUAUGCCAUU ................((((((((.(((....))).))).....(((((((((....)))))))))......(-((.(((....))).))).....))))).. ( -25.30) >consensus AACAGUUGUCAAUUUCUGGCAGCGCAAAUAUUUUUUCACAU_UCGCCUUUUCGCACUCGGAGAGGCUC_CU_GGCCCACACUUCUGUUGACUUCUAUUCCAUU .......((((((....((..(((.(((....))).))).....((((((((......))))))))..............))...))))))............ (-12.45 = -13.73 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:54 2006