| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,949,438 – 10,949,550 |
| Length | 112 |
| Max. P | 0.996137 |
| Location | 10,949,438 – 10,949,550 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -22.27 |
| Energy contribution | -23.15 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.18 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.996137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10949438 112 - 20766785 GUGGUGUACUUCAUUACACCCAUAACACCAACUGCUCCAUAAGGUACUUCAGGCCGAAA------GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGGAAAU ..((.((((((((((((.(((((..(((...(((..((....)).....))).((....------))..)))..))))).)))))..((....))))))))).))............. ( -31.30) >DroSec_CAF1 61894 98 - 1 AUGGUGUAAUGAAGUGC--------------CUGCUCCAUAAGGUACUUCAGGCCGAAA------GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGAAAAU ....(.(((((((((((--------------.((((((......(((((....((....------))))))).....))))))....((....))...))))))))))).)....... ( -29.10) >DroSim_CAF1 64176 98 - 1 GUGGUGUAAUGAAGUGC--------------CUGCUCCAUAAGGUACUUCAGGCCGAAA------GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGAAAAU ....(.(((((((((((--------------.((((((......(((((....((....------))))))).....))))))....((....))...))))))))))).)....... ( -29.10) >DroEre_CAF1 63902 98 - 1 AUUGUGUAAUGAAGUGC--------------CUGCUCCAUAAGGUACUUCGAACCGAAA------GGAAGUGAAAUGGUAGUACCAGCAGUGAUGAAAGUACUUCGUUAGGGGAAAAU .((.(.(((((((((((--------------(((((......(((((((((..((....------))...)))......)))))))))))........))))))))))).).)).... ( -29.40) >DroYak_CAF1 64802 104 - 1 GCUGUGUAAUGAAGUGC--------------CAGCUCCAUGGGGCACUUCGAUCCGAAGGGGAGGGGAAGUGAAAUGGGAGUAAUAGCAGUGAUGAAAGUACUUCGUUAGGACAAAAU ..(((.(((((((((((--------------..(((((......((((((..(((.....)))...)))))).....))))).....((....))...))))))))))).).)).... ( -33.90) >consensus GUGGUGUAAUGAAGUGC______________CUGCUCCAUAAGGUACUUCAGGCCGAAA______GGAAGUGAAAUGGGAGUAAUAGCAGUGAUGGAAGUACUUCGUUAGGGGAAAAU ....(.(((((((((((...............((((((......((((((................)))))).....))))))....((....))...))))))))))).)....... (-22.27 = -23.15 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:52 2006