Locus 3200

Sequence ID 2R_DroMel_CAF1
Location 10,945,195 – 10,945,287
Length 92
Max. P 0.508456
window5262

overview

Window 2

Location 10,945,195 – 10,945,287
Length 92
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 78.75
Mean single sequence MFE -33.87
Consensus MFE -17.99
Energy contribution -19.80
Covariance contribution 1.81
Combinations/Pair 1.19
Mean z-score -1.78
Structure conservation index 0.53
SVM decision value -0.05
SVM RNA-class probability 0.508456
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10945195 92 + 20766785
UUACUGGAGGCCAAGUGGGAGUGCC--UUCGGGGUCGUU-UGGCUGAAACUG-AUGGACACUUGGACAGACAGAUUU-UUGG---------CCGCUUGGCGCUCUG
.....((((((((((((((((((((--.((((..(((..-....)))..)))-).)).)))))...((((......)-))).---------))))))))).)))). ( -38.80)
>DroSec_CAF1 57820 92 + 1
UUACUGGGGGCCAAGUGGGAGUGCC--UUUGGGGUCGUU-UGGCUGAAACUG-AUGGACACUUGGACAGACAGAUUU-UUAG---------CCGCUUGGCGCUCUG
.....(((.((((((((((((((((--.(..(..(((..-....)))..)..-).)).)))))(......)......-....---------))))))))).))).. ( -34.50)
>DroSim_CAF1 59916 94 + 1
UUACUGGGGGCCAAGUGGGAGUGCC--UUUGGGGUCGUUUUGGUUGAAACUGGAUGGACACUUGGACAGACAGAUUU-UUAG---------CCGCUUGGCGCUCUG
.....(((.((((((((((((((((--((..(..(((.......)))..)..)).)).)))))(......)......-....---------))))))))).))).. ( -35.50)
>DroEre_CAF1 59516 94 + 1
CUACUGGGGGCCAAGUGGGAGUACCGCAUUGGGGUCGUU-CGGCUGAAUCUG-AUGGACACUUGAACAGACAGAUUU-UUGG---------CCGCUUGGCGCUCUG
.....(((.(((((((.(((..(((.(...).)))..))-)(((((((((((-.((..(....)..))..)))))))-..))---------))))))))).))).. ( -34.20)
>DroYak_CAF1 60263 93 + 1
UAUGUGGGGGCCAAGUGGGAGUGCC--UUUGGGGUCGUU-AUGCUGAAGCUG-AUGGACACUUGGACAGACAGAUUUUUUGG---------CCGCUUGGCGCUCUG
.....(((.((((((((((((((((--.(..(..(((..-....)))..)..-).)).)))))...((((.......)))).---------))))))))).))).. ( -34.30)
>DroAna_CAF1 57386 92 + 1
----------AAAAGUGGAUGUAUC--UUUAGGGUCGUUUCGGCUGCAACAG-ACAGACAGUUGGACUGGCAGUAGA-CUGGCAGUAGAUUCUGUUCGGCGCUCUG
----------......(((.((..(--..(((((((...((((((((.....-...).)))))))((((.(((....-))).)))).)))))))...)..))))). ( -25.90)
>consensus
UUACUGGGGGCCAAGUGGGAGUGCC__UUUGGGGUCGUU_UGGCUGAAACUG_AUGGACACUUGGACAGACAGAUUU_UUGG_________CCGCUUGGCGCUCUG
.....(((.((((((((((((((((....(((..(((.......)))..)))...)).)))))(......)....................))))))))).))).. (-17.99 = -19.80 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:51 2006