Locus 3199

Sequence ID 2R_DroMel_CAF1
Location 10,944,159 – 10,944,260
Length 101
Max. P 0.774100
window5261

overview

Window 1

Location 10,944,159 – 10,944,260
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 86.43
Mean single sequence MFE -31.84
Consensus MFE -20.89
Energy contribution -20.92
Covariance contribution 0.03
Combinations/Pair 1.13
Mean z-score -2.45
Structure conservation index 0.66
SVM decision value 0.54
SVM RNA-class probability 0.774100
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10944159 101 + 20766785
AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGGCUCUAUGGGUCUAUGGGUCUUUGUAUUUGGAAG
....(((((((((((((((((((....)))))).))))..)))).(((((((..((((((((.....)).))))))..))))))).....)))))...... ( -36.50)
>DroSec_CAF1 56805 93 + 1
AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGG--------CUCUAUGGGUCUUUGUAUUUGGAAG
....(((((((((((((((((((....)))))).))))..))))......((..((((((((.....)--------).))))))..))..)))))...... ( -29.00)
>DroSim_CAF1 58878 101 + 1
AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGGGUCUAUGGGUCUAUGGGUCUUUGUAUUUGGAAG
....(((((((((((((((((((....)))))).))))..)))).(((((((..((((((..(....)..))))))..))))))).....)))))...... ( -38.70)
>DroEre_CAF1 58445 85 + 1
AAUUGAUGCCCGCGCGCUGAAUAGGAAUAUUUAUACGCAUGCGGGUCUAUACGUCCAUAGGUCCA----------------CGGGUCUUUGUGUUUGGAAG
........((((((.((((((((....))))))...)).))))))((((.(((..((.((..(..----------------..)..)).))))).)))).. ( -23.20)
>DroYak_CAF1 59147 101 + 1
AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGCUCUAUAGGUCCAUGGGUCUAUGUGGCUAUGAGGCUAUGGAUCUUUGUGCUUGGAAG
....((.(((((.((((((((((....)))))).)))).)).)))))..((((..((.((((((..((((((....)))))))))))).))..)))).... ( -31.80)
>consensus
AAUUGAUGCCCGCGCGUUGAAUAGGAAUAUUUAUACGCAUGCGGUUCUAUAGGUCCAUGGGUCUAUGG__CUAUG_GUCUAUGGGUCUUUGUAUUUGGAAG
.........((((((((((((((....)))))).))))..)))).((((...((.((.((..((((((..........))))))..)).)).)).)))).. (-20.89 = -20.92 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:50 2006