Locus 3195

Sequence ID 2R_DroMel_CAF1
Location 10,931,828 – 10,931,947
Length 119
Max. P 0.953414
window5253

overview

Window 3

Location 10,931,828 – 10,931,947
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.58
Mean single sequence MFE -25.89
Consensus MFE -13.20
Energy contribution -15.34
Covariance contribution 2.14
Combinations/Pair 1.24
Mean z-score -2.12
Structure conservation index 0.51
SVM decision value 1.43
SVM RNA-class probability 0.953414
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10931828 119 + 20766785
UUUCAAGUAGUUUGAUGGUAUUCAAUUUGAGUUGGAAAUCUCUUCAUAAAAUCAUAUCUGAACUUUCCAAGCAAAUGGAACUCCAUCAAGACUAGUGAAUGUGAAAAAUCUGGAAC-UCC
.((((..(((((((((((..(((.(((((..(((((((..((...(((......)))..))..))))))).))))).)))..))))).)))))).)))).................-... ( -28.40)
>DroSec_CAF1 44644 119 + 1
UUUCAAGUAGUCUGAUGGGAUUCAAUUUGAGUUGGGAAUCUCUUCACCAUAUCAUUUCUGAACUUUCCAAGCAAAUAGAAUUCCAUCAAGAUUUGGGAAUGUGAAAAAUCUGGAAC-UCC
(..(((((....(((((((((((.(((((..(((((((..((.................))..))))))).))))).)))))))))))..)))))..)..................-... ( -31.03)
>DroSim_CAF1 46595 119 + 1
UUUCAAGUAGUCUGAUGGGAUUCAAUUUGAGUUGGAAAUCUCUUCAUCAUAUCAUCUCUGAACUUUCCAAGCAAAUAAAAUUCCAUCAAGAUUUGGGAAUGUGAAAAAUCUGGAAC-UCC
(..(((((....((((((((((..(((((..(((((((..((.................))..))))))).)))))..))))))))))..)))))..)..................-... ( -27.93)
>DroEre_CAF1 44645 119 + 1
UUUUAAGGAAUCUGAUGGGAUUCAAUUUGAGUUGGGAACCUCUGCACAAUAUCAUCUCUCAACUUUCCAAGCAAAUGGAAUUCCAUCAAGAUUUGUGAAUGUGAAAAUUCUGGCAC-UCC
.......((((((((((((((((.(((((((((((((...................)))))))).......))))).)))))))))).))))))(((...((....)).....)))-... ( -30.22)
>DroYak_CAF1 46319 119 + 1
UUCCUAGCAAUCUGAUGGCAUUCAAUUUGAGUUGGAAACCCAUGCACCAUAUCAUCUCUCAACUUUCCAAGCAAAUGGAAUUCCAUCAAGAUUUGUGAAUGUGACAAUUCUGGCAC-UUC
......((....((((((.((((.(((((..(((((((.........................))))))).))))).)))).))))))(((.((((.......)))).))).))..-... ( -26.41)
>DroAna_CAF1 43455 95 + 1
UUUCAACUAAUUUUAAAUCCUUAAAUCUUAA---------------AAAAAA-----C-UAAAUUUAUAAGCAAUUUGCA----GUUGAAAUUGGUGAAAGAGAAACACAAAACAUGCCC
(((((.((((((((((..........((((.---------------(((...-----.-....))).)))).........----.))))))))))))))).................... ( -11.35)
>consensus
UUUCAAGUAAUCUGAUGGGAUUCAAUUUGAGUUGGAAAUCUCUUCACAAUAUCAUCUCUGAACUUUCCAAGCAAAUGGAAUUCCAUCAAGAUUUGUGAAUGUGAAAAAUCUGGAAC_UCC
.(((....((((((((((.((((.(((((..(((((((.........................))))))).))))).)))).)))))).))))...)))..................... (-13.20 = -15.34 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006