Locus 3192

Sequence ID 2R_DroMel_CAF1
Location 10,920,502 – 10,920,592
Length 90
Max. P 0.695060
window5250

overview

Window 0

Location 10,920,502 – 10,920,592
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 80.91
Mean single sequence MFE -30.25
Consensus MFE -17.31
Energy contribution -15.70
Covariance contribution -1.61
Combinations/Pair 1.39
Mean z-score -2.13
Structure conservation index 0.57
SVM decision value 0.34
SVM RNA-class probability 0.695060
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10920502 90 - 20766785
GAAAGCUGAGAGCUAAGAGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUUCCUACUU----AGGUCCUGCCCCAAAUGUUAUUCAGACAAG
....(((((((((.....)))((.((...(((..((((......((....)).....)))----)..)))..))))........))))).)... ( -20.90)
>DroPse_CAF1 32473 91 - 1
--GAAAUGGGAGUUGGCGUCUGG-GGGAUGGAAAUGAGGCAAAUGCCUCUGUUUCUGUAUGGCCAGGUCCUGCCCCAAAUGUUAUUCAGACAAG
--....((((.((.((.((((((-...(((((((((((((....))))).))))))))....)))))))).))))))..((((.....)))).. ( -31.50)
>DroEre_CAF1 33396 90 - 1
GGUGGCUGGGAACUGAGGGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUCCCUACUU----CGGUCCUGCCCCAAAUGUUAUUCAGACAAG
((.(((.(....)..((((((((((....(((...(((((....)))))..)))...)))----))))))))))))...((((.....)))).. ( -32.20)
>DroYak_CAF1 34827 90 - 1
AAGGGCUGAGGGCUGAGGGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUUUCUACUU----GGGUCCUGCCCCAAAUGUUAUUCAGACAAG
......((.((((..((((((.(((...((((((((((((....))))).))))))))))----.))))))))))))..((((.....)))).. ( -30.20)
>DroAna_CAF1 32501 90 - 1
CGGUGUUGAGGGUUGGGACUUGGGGGAAUGGAAAUGAGGUAAAUGCUUCUGUUCCUGCCC----AGGUCCUGCCCCAAAUGUUAUUCAGACAAG
.........(((..((((((((((.(...((((..(((((....)))))..))))).)))----)))))))..)))...((((.....)))).. ( -35.20)
>DroPer_CAF1 33119 91 - 1
--GAAAUGGGAGUUGGCGUCUGG-GGGAUGGAAAUGAGGCAAAUGCCUCUGUUUCUGUAUGGCCAGGUCCUGCCCCAAAUGUUAUUCAGACAAG
--....((((.((.((.((((((-...(((((((((((((....))))).))))))))....)))))))).))))))..((((.....)))).. ( -31.50)
>consensus
__GAGCUGAGAGCUGAGGGCUGGAGGAAUGGAAAUGAGGUAAAUGCUUCUGUUCCUACUU____AGGUCCUGCCCCAAAUGUUAUUCAGACAAG
.........(((.(((.(..(((.((...(((...(((((....)))))....(((........))))))..)))))..).))))))....... (-17.31 = -15.70 +  -1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:39 2006