Locus 3191

Sequence ID 2R_DroMel_CAF1
Location 10,912,651 – 10,912,755
Length 104
Max. P 0.986764
window5249

overview

Window 9

Location 10,912,651 – 10,912,755
Length 104
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 73.02
Mean single sequence MFE -24.49
Consensus MFE -5.70
Energy contribution -5.78
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -2.31
Structure conservation index 0.23
SVM decision value 2.05
SVM RNA-class probability 0.986764
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10912651 104 + 20766785
CC--UGUGUCAUGUUCACGUGGAAAAACUCAGCCCUUG--ACUUUAGCCUUUAUAGGGUCAAAAGCUGAUCAGAACAUAGGGUUAUUUAAUACAUUUUUUGACCAAUA
.(--(((((((((....)))).......(((((..(((--((((((.......)))))))))..))))).....))))))(((((..............))))).... ( -27.74)
>DroSec_CAF1 25615 82 + 1
CC--UGUGUCAUGUGCACGGUUAAAAACUCAGCCCUUG--CCUUUAGCCUUUAUAGGGUCAAAAGGCGAUCAG----------------------UUUUUGACCAAUA
..--.((((.....))))(((((((((((......(((--(((((.((((.....))))..))))))))..))----------------------))))))))).... ( -27.50)
>DroSim_CAF1 27640 82 + 1
CC--UGUGUCAUGUGCACGGUUAAAAACUCAGCCCUUG--CCUUUAGCCUUUAUAGGGUCAAAAGGCGAUCAG----------------------UUUUUGACCAAUA
..--.((((.....))))(((((((((((......(((--(((((.((((.....))))..))))))))..))----------------------))))))))).... ( -27.50)
>DroEre_CAF1 25463 94 + 1
CC--UGUGUCGUGUGCACGGGGAAAAACUCAGCUCUUACUCCUUCAGCCAUUAUUGGGUCAAAAGCUGAUCAGAACAAAGAGU------------CAUGUAAUAUAUA
((--(((((.....))))))).....((...((((((..((..(((((................)))))...))...))))))------------...))........ ( -20.39)
>DroYak_CAF1 27045 86 + 1
ACGUUGUGUCAUGUGCACGGGAAAAAACUCGGCUCUUACUCCCUUUGCCUUUAUAGGGUUAAAGGCUAAUCAC----------------------UUUUUGAGCAAUA
..(((((.(((.(.((.((((......)))))).)...........(((((((......))))))).......----------------------....)))))))). ( -19.30)
>consensus
CC__UGUGUCAUGUGCACGGGGAAAAACUCAGCCCUUG__CCUUUAGCCUUUAUAGGGUCAAAAGCUGAUCAG______________________UUUUUGACCAAUA
.....((((.....)))).......................(((..((((.....))))...)))........................................... ( -5.70 =  -5.78 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:38 2006