Locus 3190

Sequence ID 2R_DroMel_CAF1
Location 10,910,054 – 10,910,153
Length 99
Max. P 0.997223
window5248

overview

Window 8

Location 10,910,054 – 10,910,153
Length 99
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 76.79
Mean single sequence MFE -21.27
Consensus MFE -5.98
Energy contribution -6.62
Covariance contribution 0.64
Combinations/Pair 1.09
Mean z-score -2.88
Structure conservation index 0.28
SVM decision value 2.82
SVM RNA-class probability 0.997223
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10910054 99 - 20766785
AGCUUUC--CAAAUUCAAAUGGAAACUGAAAUUGCGGGUAAAUCAGAGCCAAACCGCAUUU-----UCCAGUUUCCCAAAAAAUUACCACAUUAAAGGUUUUGGAG
.....((--((((.......(((((((((((.(((((................))))).))-----).)))))))).........(((........))))))))). ( -27.49)
>DroSec_CAF1 23097 100 - 1
AGCUUUCCCCAAAUUCAAAUGGAAACUGAAAUUGCGGGUAAAUCAAAGCCAAACCACAUUU-----UCCAGUUUCCCAAAA-AGUACCACAUAAAAGGUUUUUGAG
..............(((((.(((((((((((.((.((................)).)).))-----).)))))))).....-...(((........))).))))). ( -18.79)
>DroSim_CAF1 24990 100 - 1
AGCAUUCCCCAAAUGCAAAUGGAAACUGAAAUUGCGGGUAAAUCAGAACCAAACCACAUUU-----UCCAGUUUCCCACAA-AGUACCACAUAAAAGGUUUUUGAG
.(((((.....)))))....(((((((((((.((.((................)).)).))-----).))))))))..(((-((.(((........)))))))).. ( -24.09)
>DroEre_CAF1 22925 101 - 1
AAUUU-U--CGAAUUCAAAUCGAAACUGAAAAUUACGCUAAAUCGGAU-CGAACCACAUUUUAGUUUUCAGGUUCCCAAAA-AGUGCCACAUAAAAGGUAUUAAAC
...((-(--(((.......))))))((((((.....((((((..((..-....))....))))))))))))..........-((((((........)))))).... ( -17.70)
>DroYak_CAF1 24350 87 - 1
GACUUUC--CGAAUCCAAAUCGAAACUGAAAUUAAGGGGAA----------AACCACAUU------UUCAAUUUCCCAAAA-AGUACCACAUAAAAGGUACGAAAG
..(((((--............((((.(((((.....((...----------..))....)------)))).))))......-.(((((........)))))))))) ( -18.30)
>consensus
AGCUUUC__CAAAUUCAAAUGGAAACUGAAAUUGCGGGUAAAUCAGAGCCAAACCACAUUU_____UCCAGUUUCCCAAAA_AGUACCACAUAAAAGGUUUUAGAG
....................((((((((........................................)))))))).........(((........)))....... ( -5.98 =  -6.62 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:37 2006