Locus 3189

Sequence ID 2R_DroMel_CAF1
Location 10,908,694 – 10,908,791
Length 97
Max. P 0.999405
window5247

overview

Window 7

Location 10,908,694 – 10,908,791
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 97.55
Mean single sequence MFE -25.45
Consensus MFE -24.08
Energy contribution -23.76
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -2.36
Structure conservation index 0.95
SVM decision value 3.58
SVM RNA-class probability 0.999405
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10908694 97 + 20766785
GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGUCCUU
((.((--(((((......)))))))...))..........(((((((((((((((..((((...........)))).))).))))))....)))))).. ( -22.90)
>DroSec_CAF1 21744 97 + 1
GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGCCCUU
((.((--(((((......)))))))...)).(((((.((((((((((.((.......(((....))).......))))))..))))))...)))))... ( -24.94)
>DroSim_CAF1 23623 97 + 1
GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGCCCUU
((.((--(((((......)))))))...)).(((((.((((((((((.((.......(((....))).......))))))..))))))...)))))... ( -24.94)
>DroEre_CAF1 21590 97 + 1
GUUGU--GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGCAUUUCCAUUGAAAAGCCCUU
((.((--(((((......)))))))...)).(((((.((((((.....((.......(((....))).......))......))))))...)))))... ( -24.84)
>DroYak_CAF1 23021 99 + 1
GUUGUGUGUGUGUUGAUUUACAUAUUUUGCGGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGCCCUGAAUUUCCAUUGAAAAGCCCUU
((...(((((((......)))))))...))((((((.((((((((((.((.......(((....)))......)).))))..))))))...)))))).. ( -29.62)
>consensus
GUUGU__GUGUGUUGAUUUACAUAUUUUGCAGGCUUAAGUGGAUUUAUGGAAUUCUUGGCUCUUGCUUUUCUGGCCUGAAUUUCCAUUGAAAAGCCCUU
..(((..((((((......))))))...)))(((((.((((((.....((.......(((....))).......))......))))))...)))))... (-24.08 = -23.76 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:36 2006