| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,869,595 – 10,869,707 |
| Length | 112 |
| Max. P | 0.576242 |
| Location | 10,869,595 – 10,869,707 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.21 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -21.45 |
| Energy contribution | -21.57 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10869595 112 - 20766785 UACAGAUAGCUGUACAUAUGUACAUA-------UAUUCCGCAUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG ....((((..(((((....)))))..-------))))..((.......((......))....(((((((((((((......)))))))).)))))....)).((((((.....)))))) ( -27.80) >DroSim_CAF1 10498 109 - 1 UACUCAUA--UGUACAUAUGUAUAUA-------UUUU-UACUUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG ...(((((--(((((....)))))))-------)...-..........((......))))..(((((((((((((......)))))))).))))).......((((((.....)))))) ( -26.30) >DroEre_CAF1 11446 113 - 1 UGCUC------GUACAUGUGCAUAUACUCGUCGUAUUCCACAUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG .((((------((.((((((...((((.....))))..))))))))..((......))))..(((((((((((((......)))))))).)))))....)).((((((.....)))))) ( -32.30) >consensus UACUCAUA__UGUACAUAUGUAUAUA_______UAUUCCACAUGACAAGGGAACAACCGAACUGAUGGCGAGAUUAAUCAAAGUCUCGCACAUUAAAUAGCCCCGAUUCGAUCGAUUGG ...........((((....)))).........................((......))....(((((((((((((......)))))))).))))).......((((((.....)))))) (-21.45 = -21.57 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:23 2006