Locus 3178

Sequence ID	2R_DroMel_CAF1
Location	10,855,233 – 10,855,347
Length	114
Max. P	0.831530

overview

Window 0

Location	10,855,233 – 10,855,347
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	98.54
Mean single sequence MFE	-42.90
Consensus MFE	-42.28
Energy contribution	-41.90
Covariance contribution	-0.38
Combinations/Pair	1.06
Mean z-score	-2.02
Structure conservation index	0.99
SVM decision value	0.72
SVM RNA-class probability	0.831530
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10855233 114 + 20766785
CCGCCAAAGGAUUCAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGUCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU
((......)).......((((((((((.....((.(((....)))..)).((((.((.(..(....)..).))..))))..))))))....)))).(((((....))))).... ( -40.60)
>DroSec_CAF1 4301 114 + 1
CCGCCAAAGGAUUUAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU
((......)).......((((((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..))))))....)))).(((((....))))).... ( -43.80)
>DroSim_CAF1 4654 114 + 1
CCGCCAAAGGAUUUAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU
((......)).......((((((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..))))))....)))).(((((....))))).... ( -43.80)
>DroEre_CAF1 5612 114 + 1
CCGCCAAAGGAUUCAAAGUAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU
.(((....(((((.......(((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..)))))))))))))))(((((....))))).... ( -43.41)
>consensus
CCGCCAAAGGAUUCAAAGCAGCUCCCGGAAAACCUUCAACCCUGAUUGGAGCCCUUGGGGCCAGCUGGUCACACUGGGCAACGGGAGUAAUCUGCGGGAGCACAGGCUCCAAUU
((......)).......((((((((((.....((.(((....)))..)).((((.((.((((....)))).))..))))..))))))....)))).(((((....))))).... (-42.28 = -41.90 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:20 2006