Locus 3177

Sequence ID 2R_DroMel_CAF1
Location 10,852,053 – 10,852,147
Length 94
Max. P 0.836340
window5229

overview

Window 9

Location 10,852,053 – 10,852,147
Length 94
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -20.35
Consensus MFE -14.00
Energy contribution -14.88
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.90
Structure conservation index 0.69
SVM decision value 0.73
SVM RNA-class probability 0.836340
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10852053 94 + 20766785
CUCAAACGAGUGCUCGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACCUCCCAGUCCCA----CUCCCACUUCCACUUCCAGU-CCCACU
.......(((((....(((.((...((((.....))))..))))).....((((........))))))----))).................-...... ( -19.60)
>DroSec_CAF1 1108 80 + 1
CUUAAACGAGUGCUCGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACCUCCCAGUCCCA----CUCCCAAUCCCG---------------
.......(((((....(((.((...((((.....))))..))))).....((((........))))))----))).........--------------- ( -19.60)
>DroEre_CAF1 1173 85 + 1
CUAACACCAGUGCUCGGAGCGAUUUUGCCAGUGUGACAUUUCCUCAUUACGGACACGUCCCAGUCCCA----GUCCCACUCC------CAGU-CCC---
.........(..((.((((.(...(((..(.((.(((...(((.......)))...))).)).)..))----)...).))))------.)).-.).--- ( -16.00)
>DroYak_CAF1 1174 90 + 1
CUAAAACGAGUGCCAGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACGUCCCACUCCCAUGUCGUUCCACUCC------CAAACCCC---
.......((((....((((((((..((..((((.(((...(((.......)))...))).))))..)).)))))))))))).------........--- ( -26.20)
>consensus
CUAAAACGAGUGCUCGGAGCGAUUUUGUCAGUGUGACAUUUCCUCAUUACGGACACCUCCCAGUCCCA____CUCCCACUCC______CAGU_CCC___
.......(((((....(((.((...((((.....))))..))))).....((((........))))..........))))).................. (-14.00 = -14.88 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:19 2006