Locus 3175

Sequence ID	2R_DroMel_CAF1
Location	10,838,235 – 10,838,328
Length	93
Max. P	0.992292

overview

Window 6

Location	10,838,235 – 10,838,328
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	96.02
Mean single sequence MFE	-19.98
Consensus MFE	-18.68
Energy contribution	-18.52
Covariance contribution	-0.16
Combinations/Pair	1.10
Mean z-score	-1.76
Structure conservation index	0.93
SVM decision value	2.32
SVM RNA-class probability	0.992292
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10838235 93 + 20766785
CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGGAAGACCUCGCCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU
.(((((((.(((.(((...((.....))...))).(((((((((((.(((...........)))...))))))))))).)))..))))))).. ( -18.50)
>DroSec_CAF1 45806 93 + 1
CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGACUUCGUCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGAUUUAAU
.(((((((.(((.(((...((.....))...))).(((((((((((((((...........))))..))))))))))).)))..))))))).. ( -21.60)
>DroSim_CAF1 46033 93 + 1
CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGACUUCGUCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU
.(((((((.(((.(((...((.....))...))).(((((((((((((((...........))))..))))))))))).)))..))))))).. ( -21.00)
>DroEre_CAF1 51220 93 + 1
CUGAAUCUCGCCCAGCUAUUCUUACCGAUAUGCUUAUUUGAAAGAAGUCGUCAACUCUACUUGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU
.(((((((.(((.(((...((.....))...))).((((((((((.....((((......))))....)))))))))).)))..))))))).. ( -19.60)
>DroYak_CAF1 51657 93 + 1
CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGAGCUCGUCAACUCUACUUGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU
.(((((((.(((.(((...((.....))...))).((((((((((.(...((((......))))...))))))))))).)))..))))))).. ( -19.20)
>consensus
CUGAAUCUCGCCCAGCUAUUCUUAUCGAUAUGCUUAUUUGAAAGACCUCGUCAACUCUACUCGAACUGUUUUUCAGAUUGGCUAAGGUUUAAU
.(((((((.(((.(((...((.....))...))).(((((((((((.(((...........)))...))))))))))).)))..))))))).. (-18.68 = -18.52 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:16 2006