Locus 3165

Sequence ID 2R_DroMel_CAF1
Location 10,809,978 – 10,810,071
Length 93
Max. P 0.998202
window5211

overview

Window 1

Location 10,809,978 – 10,810,071
Length 93
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 90.24
Mean single sequence MFE -23.33
Consensus MFE -20.65
Energy contribution -19.69
Covariance contribution -0.96
Combinations/Pair 1.24
Mean z-score -2.32
Structure conservation index 0.89
SVM decision value 3.03
SVM RNA-class probability 0.998202
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10809978 93 - 20766785
CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUUUACC--AAAAAAAAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU
..........(((((..((((.(((((((((....)).....(((((((....((--((........))))))))))).)))))))))))))))) ( -23.30)
>DroSec_CAF1 17419 91 - 1
CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUCUACU--AAAA--AAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU
..........(((((..((((.(((((((((....)).....(((((((((....--....--......))))))))).)))))))))))))))) ( -24.64)
>DroSim_CAF1 17597 92 - 1
CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUCUACU--AAAA-AAAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU
..........(((((..((((.(((((((((....)).....(((((((((....--....-.......))))))))).)))))))))))))))) ( -24.56)
>DroEre_CAF1 22539 92 - 1
CAGUUGGUCCGCCUAAAAGUCAUUUUGGCGGAAAUUCAUAUGCGUUUUCCCUUCU--AAAA-UAAAAAUGGGAAAGCAAGUUAAGAGGCUUAGAU
..(....((((((.((((....))))))))))....)......((((((((....--....-.......))))))))(((((....))))).... ( -24.36)
>DroYak_CAF1 18460 94 - 1
CAUUUGGUUCGCCCAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUUUUUUCCUAAAAA-AAAAAACGGGAAAGCAAGUUAAGAGGCUCAGAU
..(((((.....)))))((((.(((((((((....))...(.(((((((((((.....)))-)))))))).).......)))))))))))..... ( -19.80)
>consensus
CAUUUGGUUCGUCUAAAAGUCAUUUUGGCGGAAAUCCAUAUGUGUUUUCUCUACU__AAAA_AAAAAUUGGGAAAGCAAGCUAAGAGGCUUAGAU
(((.(((((((((.((((....))))))))))...))).))).((((((((..................))))))))(((((....))))).... (-20.65 = -19.69 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:01 2006