| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,803,547 – 10,803,666 |
| Length | 119 |
| Max. P | 0.925707 |
| Location | 10,803,547 – 10,803,666 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.99 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -27.55 |
| Energy contribution | -27.33 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10803547 119 - 20766785 AUUUUU-UUAUUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUUUCCAUUAGUGAGUAAUCACGAUUUAUGACAGUGCAUCUGGGUGCAUGCACUUCAC ......-..................(((((((.((((((..((....))..))))))...............((((....)))))))))))((.((((((((.....).))))))))).. ( -29.20) >DroSec_CAF1 11071 120 - 1 AUUUUUUUUAUUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUCUUCAUUAGUGAGUAAUCACGAUUUAUGACAGUGCACAUGGGUGCAUGCACUCUAC .........................(((((((.((((((..((....))..))))))...............((((....)))))))))))....((((((....))))))......... ( -27.50) >DroSim_CAF1 11164 119 - 1 AAUUUU-UUAAUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUCUUCAUUAGUGAGUAAUCACGAUUUAUGACAGUGCACAUGGGUGCAUGCACUUUAC ......-..................(((((((.((((((..((....))..))))))...............((((....)))))))))))....((((((....))))))......... ( -27.50) >consensus AUUUUU_UUAUUCAAUUUCUUUAAAAUGAAUCACCAAUUUGUUUGUUAAUGAAUUGGGGCAGCUCUUCAUUAGUGAGUAAUCACGAUUUAUGACAGUGCACAUGGGUGCAUGCACUUUAC .........................(((((((.((((((..((....))..))))))...............((((....)))))))))))....((((((....))))))......... (-27.55 = -27.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:59 2006