| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,789,605 – 10,789,706 |
| Length | 101 |
| Max. P | 0.953254 |
| Location | 10,789,605 – 10,789,706 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -35.40 |
| Consensus MFE | -26.02 |
| Energy contribution | -25.50 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10789605 101 - 20766785 UGCCCUCCUCGCUCAUCCCUGUAGUCAGGUUAUCCUGGCGGAUCUGUGGAUGGGUGGACUGCGAACCCGCAAGAAUACCAACUUCAAGGUAUGUCUUAU----AG------- .........((((((((((.(..((((((....))))))....).).)))))))))(((((((....))))...(((((........))))))))....----..------- ( -34.00) >DroVir_CAF1 238 112 - 1 CGCCCUGCUUGCCCAUCCCUGCAGCCAGGUCAUACUGGCGGAUCUCUGGAUGGGCGGAUUGCGUACACGCAAGAAUACCAAUUUUAAGGCAAGUACUAGAAGAAAAAAAUGU .(((......((((((((.....(((((......)))))((....))))))))))((.(((((....))))).....))........)))...................... ( -37.60) >DroPse_CAF1 204 104 - 1 GGCUCUGCUUGCCCACCCCUGUAGUCAGGUCAUCCUGGCCGAUCUCUGGAUGGGCGGCCUACGCACCCGCAAGAAUACCAACUUCAAGGUGCGACUUCU----AGC-AA--- .(((..(((.(((((.((..(..(((.((((.....)))))))..).)).))))))))...((((((...(((........)))...))))))......----)))-..--- ( -35.30) >DroGri_CAF1 223 103 - 1 CGCCCUCCUCGCCCAUCCCUGUAGCCAGGUCAUACUCGCCGAUCUCUGGAUGGGCGGCCUGCGAACGCGCAAGAAUACCAAUUUUAAGGUGACUUU------AAAUCAA--- ((((....((((((((((..(.((...(((.......)))...))).))))))))))..((((....))))................)))).....------.......--- ( -30.10) >DroAna_CAF1 203 99 - 1 GGCCCUCCUCGCCCAUCCUUGCAGUCAGGUUAUCCUGGCGGACCUUUGGAUGGGUGGUCUCCGCACUCGCAAGAACACCAACUUCAAGGUGAGUGCCAG------------- ((((......((((((((.....((((((....))))))........))))))))))))...((((((((..(((.......)))...))))))))...------------- ( -40.12) >DroPer_CAF1 204 104 - 1 GGCUCUGCUUGCCCACCCCUGUAGUCAGGUCAUCCUGGCCGAUCUCUGGAUGGGCGGCCUACGCACCCGCAAGAAUACCAACUUCAAGGUGCGACUUCU----AGC-AA--- .(((..(((.(((((.((..(..(((.((((.....)))))))..).)).))))))))...((((((...(((........)))...))))))......----)))-..--- ( -35.30) >consensus GGCCCUCCUCGCCCAUCCCUGUAGUCAGGUCAUCCUGGCCGAUCUCUGGAUGGGCGGCCUGCGCACCCGCAAGAAUACCAACUUCAAGGUGAGUCUUAU____AG__AA___ ........((((((((((..(..(((((......)))))....)...))))))))))..........(....)..((((........))))..................... (-26.02 = -25.50 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:53 2006