Locus 3157

Sequence ID 2R_DroMel_CAF1
Location 10,781,470 – 10,781,571
Length 101
Max. P 0.888942
window5202

overview

Window 2

Location 10,781,470 – 10,781,571
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 99.21
Mean single sequence MFE -24.82
Consensus MFE -23.86
Energy contribution -24.06
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.96
SVM decision value 0.95
SVM RNA-class probability 0.888942
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10781470 101 + 20766785
AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU
...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70)
>DroSec_CAF1 17456 101 + 1
AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU
...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70)
>DroSim_CAF1 17770 101 + 1
AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU
...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70)
>DroEre_CAF1 17362 101 + 1
AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU
...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... ( -24.70)
>DroYak_CAF1 18853 101 + 1
AUUGGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCUGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU
.((((((((..............(((((.......)))))..((((.((((((((.(((((........)))))))))..))))))))..)).)))))).. ( -25.30)
>consensus
AUUAGAUCGAAGAAUAUCAAGUUCAGAAUGACAUUUUCUGUCCCAGUGUGCUUGGUAUUGCAGCGAUAUGUAAUUCAAACGCACCUGGAGCGAAUUCAAAU
...........((((.((......((((.......))))(..((((.((((((((.((((((......))))))))))..))))))))..))))))).... (-23.86 = -24.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:52 2006