Locus 3155

Sequence ID 2R_DroMel_CAF1
Location 10,771,030 – 10,771,134
Length 104
Max. P 0.759374
window5200

overview

Window 0

Location 10,771,030 – 10,771,134
Length 104
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 78.94
Mean single sequence MFE -19.33
Consensus MFE -11.70
Energy contribution -11.54
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.61
SVM decision value 0.50
SVM RNA-class probability 0.759374
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10771030 104 + 20766785
UUACAUUA------UUAGCACACAAUUUUACAUCACAACUA-----UAUACAGUGUUAAAUUGUUCAUCUCCACAGCCCCACUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU
......((------(..(((((((((((.((((........-----......)))).)))))))...........((((............)))).))))..))).......... ( -19.74)
>DroSec_CAF1 7020 109 + 1
UACUAUUA------UCAGCACACAACUUUACAUCACAACUUUGACUUAUACAGUGUUACAUUUUUCAUCUCCACAGCCCCACAUACAUUUUGGGCAGUGCCGAUACACUGCGCCU
........------...((.............(((......)))......((((((..........(((..(((.((((............)))).)))..))))))))).)).. ( -16.70)
>DroSim_CAF1 7050 109 + 1
UACGAUUA------UUAGCACAAAACUUUACAGCACAACUUUCACUUAUACAGUGUUACAUUUUUCAUCUCCACAGCCCCACAUACAUUUUGGGCAGUGCCGAUACACUGCGCCU
......((------(..((((..........(((((................)))))..................((((............)))).))))..))).......... ( -16.89)
>DroEre_CAF1 6784 114 + 1
CACAAUUAUACUCGUAAGCACCCCAAUUUACAUCAUACCUUUGACUUAUAAAGCGUUCCAUU-UUCGUUUCCACAGCCCCACUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU
.............(((((..............(((......)))......(((((.......-..)))))...........))))).....((((((((......)))))).)). ( -18.30)
>DroYak_CAF1 6987 101 + 1
-------------UUAAUCGCAGUAAUUUAGCGUAGAACUAUGACUUAUAAUGUGUUAUAUU-UUUAUUUCCCCAGCCCCAAUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU
-------------.....((((((...(..((((((((.((((((.........)))))).)-))))).......((((.((......)).))))...))..)...))))))... ( -25.00)
>consensus
UAC_AUUA______UAAGCACACAAAUUUACAUCACAACUUUGACUUAUACAGUGUUACAUU_UUCAUCUCCACAGCCCCACUUACAUUUUGGGCAGUGCCGAUACACUGCGCCU
....................................................((((...................((((............))))((((......)))))))).. (-11.70 = -11.54 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:50 2006