| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,077,394 – 2,077,485 |
| Length | 91 |
| Max. P | 0.613369 |
| Location | 2,077,394 – 2,077,485 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -26.35 |
| Consensus MFE | -14.70 |
| Energy contribution | -15.53 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2077394 91 + 20766785 UCAG---------GUCUG-GAGCCUUUUGUCAAGGUGAUUUAUCACCUCUAAGCGCCUGGCACUCAUUAAUUUUUGAUUGGGC-C-AAAAAGGCAAA-----CAGCAG ....---------(.(((-..(((((((....((((((....))))))....(.(((..(...(((........))))..)))-)-.)))))))...-----)))).. ( -25.80) >DroVir_CAF1 55929 95 + 1 --UUUUGCCUGGCUCU---GUGCC-UUUGUCAAGGUGAUUUAUCACUUAUAAGCGCCUGGCACUCAUUAAUUUUUGAUUGGGC-CAAAAAAGGCAAA-----CGGCA- --.((((((((((((.---(((((-..(((..((((((....))))))....)))...)))))(((........)))..))))-).....)))))))-----.....- ( -29.00) >DroGri_CAF1 150237 95 + 1 UCCGGUUU----CGUUUG-GUGCC-UUUGUCAAGGUGAUUUAUCACUUCUAAGCGCCUGGCACUCAUUAAUUUUUGAUUGGGC-CAAAAAAGGCAAA-----CGGCA- .((((...----...)))-)((((-((((((.(((((.((((.......)))))))))(((.((.((((.....)))).))))-)......))))))-----.))))- ( -25.70) >DroMoj_CAF1 104430 91 + 1 --CUGUUU----CUUU---UUGCC-UUUGUCAAGGUGAUUUAUCACUUCUAAGCGCCUGGCACUCAUUAAUUUUUGAUUGGGC-CAAAAAAGGCAUA-----CGGCA- --......----....---.((((-..((((.(((((.((((.......)))))))))(((.((.((((.....)))).))))-)......))))..-----.))))- ( -21.70) >DroAna_CAF1 63839 93 + 1 UCAG---------GUCCCCCCGGUUUCUGGCAAGGUGAUUUAUCACCUCUAAGCGCCUGGCACUCAUUAAUUUUUGAUUGGACCC-GAAAAGGCACC-----CGGCCA ((.(---------((((.((.(((.(.(((..((((((....))))))))).).))).))...(((........)))..))))).-))...(((...-----..))). ( -26.90) >DroPer_CAF1 74580 95 + 1 UC-----------GUCUG-GUGCCUUUUGUCAAGGUGAUUUAUCACUUCUAAGCGCCUGGCACUCAUUAAUUUUUGAUUGGGC-CUCAAAAGGCAAAAACGACGGCCA ((-----------(((..-.(((((((((...(((((.((((.......)))))))))(((.((.((((.....)))).))))-).))))))))).....)))))... ( -29.00) >consensus UCAG_________GUCUG_GUGCC_UUUGUCAAGGUGAUUUAUCACUUCUAAGCGCCUGGCACUCAUUAAUUUUUGAUUGGGC_CAAAAAAGGCAAA_____CGGCA_ .....................(((.((((((.((((((....))))))......(((..(...(((........))))..)))........))))))......))).. (-14.70 = -15.53 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:14 2006