Locus 3143

Sequence ID 2R_DroMel_CAF1
Location 10,740,015 – 10,740,110
Length 95
Max. P 0.943481
window5178

overview

Window 8

Location 10,740,015 – 10,740,110
Length 95
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 87.34
Mean single sequence MFE -40.14
Consensus MFE -32.79
Energy contribution -33.07
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -2.05
Structure conservation index 0.82
SVM decision value 1.34
SVM RNA-class probability 0.943481
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10740015 95 - 20766785
AGCUCGACUGGAUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGACAG------UCGCACCAGUCGGA-------UGUCGGAUGUUGGCCCGGUCCAA
.....((((((.((((((((((((((((.....).))))))))))).....((((((.------.(((....).))..-------))))))..))))..))))))... ( -38.60)
>DroSec_CAF1 7090 88 - 1
AGCUCGACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG------UCGCACCAGUCGG--------------AUGUUGGCCCGGUCCGA
.....(((((((..((((((((((((((.....).))))))))))).....(((((..------........)))))--------------..))..).))))))... ( -36.40)
>DroSim_CAF1 6715 88 - 1
AGCUCGACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG------UCGCACCAGUCGG--------------AUGUUGGCCCGGUCCGA
.....(((((((..((((((((((((((.....).))))))))))).....(((((..------........)))))--------------..))..).))))))... ( -36.40)
>DroEre_CAF1 6956 102 - 1
AGCUCGACUGGCCGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG------UCGCACCAGUCGGAUGUCAGAUGUCGGGUGUUGGCCCGGUCCGA
.....(((((((((((((((((((((((.....).)))))))))))....(((((((.------..(((((....)).)))....))))))).))))).))))))... ( -48.00)
>DroYak_CAF1 6694 101 - 1
AGCUCCACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAGUUGCAGUCGCAGCAGUAGGA-------UGUCGGAUGUUGGCCCGGUCCGA
.(..((...(((..((.(((((((((((.....).))))))))))((((((...((.(((((....))))).)).)))-------.)))....))..))).))..).. ( -41.30)
>consensus
AGCUCGACUGGCUGACUGGCUAAAUGGCUAACUGCCCAUUUGGCCGACUCCCCGGCAG______UCGCACCAGUCGGA_______UGUCGGAUGUUGGCCCGGUCCGA
.....(((((((((((((((((((((((.....).))))))))))).....(((((................)))))................))))).))))))... (-32.79 = -33.07 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:30 2006