| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,727,711 – 10,727,822 |
| Length | 111 |
| Max. P | 0.747173 |
| Location | 10,727,711 – 10,727,822 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.50 |
| Mean single sequence MFE | -40.02 |
| Consensus MFE | -28.64 |
| Energy contribution | -28.25 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10727711 111 - 20766785 AUUUAAGGAAUCCAAACCGGACAUCGAAUCGCCGCCGAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG .........((((....(((........((((((((..(((....((((((.((((((.....)))))))))))))))))))))))......))).(....)...)))).. ( -41.54) >DroSec_CAF1 64559 111 - 1 AUUCAAGGAGUCCAAACCGGACAUCGAAUCGCCGCCCAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG ((((..((.((((.....))))........((.(((((...((((((((((.((((((.....)))))))))))))..)))..))))).)).))(.(....))..)))).. ( -48.60) >DroSim_CAF1 64850 111 - 1 AUUCAAGGAGUCCAAACCGGACAUCGAAUCGCCGCCAAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG ((((..((.((((.....))))......(((((((((.......(((((((.((((((.....))))))))))))).)))))))))......))(.(....))..)))).. ( -44.40) >DroEre_CAF1 71491 111 - 1 AUACAAGGAAUCCAAGCCGGACAUCGAGUCGCCACCGAAGAACUACCGCCCCGCCGAGGUUAAUUCAGUGGGUGGCCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG .........((((..(((.(((.....)))(((((((........((((((.((.(((.....))).))))))))..))))))).)))......(.(....))..)))).. ( -34.60) >DroAna_CAF1 64338 109 - 1 UCCUAAAGAGUCUAAGCAAGAUCUGGACUCUCCUCCGAAAAAUUACCGCCCCGCUGAGGUCAACUCGGUGGGUGGGCUGGUGGUGGGAAGCUCGGAUGACAAUAAGGAU-- ((((...(((((((.........)))))))((.(((((....((((((((((((((((.....))))))))(....).)))))))).....))))).)).....)))).-- ( -42.00) >DroPer_CAF1 66555 111 - 1 UCCAAAAGACUCCAACAAAGAUGGCGAAUCUCCUCCUAAAAACUAUCGGCCAGCUGAGGUCAACUCGGUGGGAGGUCUAGUUGUGGGCAGCACUGACGAAAGUAAGGAUUC (((....(.(((((((..((((.....))))((((((.....(....)....((((((.....))))))))))))....)))).)))).......((....))..)))... ( -29.00) >consensus AUUCAAGGAGUCCAAACCGGACAUCGAAUCGCCGCCGAAGAACUACCGCCCCGCCGAGGUUAAUUCGGUGGGCGGUCUGGUGGUGGGCAGCACCGACGAAAGCAAGGAUAG .........((((.................((.(((.(...((((((((((.((((((.....))))))))))))..))))..).))).)).....(....)...)))).. (-28.64 = -28.25 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:27 2006